BEDTools-2.27.1-alt1_1.i586.rpm


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Description

BEDTools - A flexible suite of utilities for comparing genomic features

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports i586
Package name BEDTools
Package version 2.27.1
Package release alt1_1
Package architecture i586
Package type rpm
Installed size 7.57 MB
Download size 7.57 MB
Official Mirror ftp.altlinux.org
The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.

Alternatives

Package Version Architecture Repository
BEDTools-2.27.1-alt1_1.x86_64.rpm 2.27.1 x86_64 Autoimports
BEDTools - - -

Requires

Name Value
/lib/ld-linux.so.2 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.1.3) -
libc.so.6(GLIBC_2.15) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libc.so.6(GLIBC_2.8) -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GLIBC_2.0) -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.23) -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.8) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libz.so.1 -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -

Provides

Name Value
BEDTools = 2.27.1-alt1_1

Download

Type URL
Binary Package BEDTools-2.27.1-alt1_1.i586.rpm
Source Package BEDTools-2.27.1-alt1_1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus i586 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install BEDTools rpm package:
    # sudo apt-get install BEDTools

Files

Path
/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bamToFastq
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/bedpeToBam
/usr/bin/bedtools
/usr/bin/closestBed
/usr/bin/clusterBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/expandCols
/usr/bin/fastaFromBed
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/getOverlap
/usr/bin/groupBy
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/mapBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/multiBamCov
/usr/bin/multiIntersectBed
/usr/bin/nucBed
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/randomBed
/usr/bin/shiftBed
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/tagBam
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/bin/windowMaker
/usr/share/BEDTools/
/usr/share/BEDTools/data/aluY.chr1.bed.gz
/usr/share/BEDTools/data/gerp.chr1.bed.gz
/usr/share/BEDTools/data/knownGene.hg18.chr21.bed
/usr/share/BEDTools/data/knownGene.hg18.chr21.short.bed
/usr/share/BEDTools/data/refseq.chr1.exons.bed.gz
/usr/share/BEDTools/data/simpleRepeats.chr1.bed.gz
/usr/share/BEDTools/genomes/human.hg18.genome
/usr/share/BEDTools/genomes/human.hg19.genome
/usr/share/BEDTools/genomes/human.hg38.genome
/usr/share/BEDTools/genomes/mouse.mm10.genome
/usr/share/BEDTools/genomes/mouse.mm8.genome
/usr/share/BEDTools/genomes/mouse.mm9.genome
/usr/share/doc/BEDTools-2.27.1/LICENSE
/usr/share/doc/BEDTools-2.27.1/README.md
/usr/share/doc/BEDTools-2.27.1/RELEASE_HISTORY
/usr/share/doc/BEDTools-2.27.1/html/.buildinfo
/usr/share/doc/BEDTools-2.27.1/html/genindex.html
/usr/share/doc/BEDTools-2.27.1/html/index.html
/usr/share/doc/BEDTools-2.27.1/html/objects.inv
/usr/share/doc/BEDTools-2.27.1/html/search.html
/usr/share/doc/BEDTools-2.27.1/html/searchindex.js
/usr/share/doc/BEDTools-2.27.1/html/_images/barski_binding_site.png
/usr/share/doc/BEDTools-2.27.1/html/_images/bedtoolsMenu.png
/usr/share/doc/BEDTools-2.27.1/html/_images/closest-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/cluster-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/complement-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/flank-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/galaxy-bedtools.png
/usr/share/doc/BEDTools-2.27.1/html/_images/genomecov-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/getfasta-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/github-zip-button.png
/usr/share/doc/BEDTools-2.27.1/html/_images/intersect-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/jaccard-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/map-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/map-speed-comparo.png
/usr/share/doc/BEDTools-2.27.1/html/_images/maskfasta-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/memory-comparo.png
/usr/share/doc/BEDTools-2.27.1/html/_images/merge-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/random-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/reldist-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/reldist-plot.png
/usr/share/doc/BEDTools-2.27.1/html/_images/res-genes.png
/usr/share/doc/BEDTools-2.27.1/html/_images/shuffle-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/slop-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/speed-comparo.png
/usr/share/doc/BEDTools-2.27.1/html/_images/subtract-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/window-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_sources/index.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/advanced-usage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/bedtools-suite.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/example-usage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/faq.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/general-usage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/history.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/installation.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/overview.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/quick-start.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/related-tools.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tips-and-tricks.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/annotate.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bamtobed.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bamtofastq.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bed12tobed6.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bedpetobam.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bedtobam.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/closest.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/cluster.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/complement.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/coverage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/expand.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/fisher.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/flank.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/genomecov.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/getfasta.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/groupby.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/igv.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/intersect.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/jaccard.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/links.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/makewindows.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/map.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/maskfasta.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/merge.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/multicov.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/multiinter.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/nuc.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/overlap.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/pairtobed.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/pairtopair.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/random.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/reldist.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/shift.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/shuffle.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/slop.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/sort.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/subtract.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/tag.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/unionbedg.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/window.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_static/ajax-loader.gif
/usr/share/doc/BEDTools-2.27.1/html/_static/basic.css
/usr/share/doc/BEDTools-2.27.1/html/_static/bedtools.png
/usr/share/doc/BEDTools-2.27.1/html/_static/bedtools.swiss.png
/usr/share/doc/BEDTools-2.27.1/html/_static/classic.css
/usr/share/doc/BEDTools-2.27.1/html/_static/comment-bright.png
/usr/share/doc/BEDTools-2.27.1/html/_static/comment-close.png
/usr/share/doc/BEDTools-2.27.1/html/_static/comment.png
/usr/share/doc/BEDTools-2.27.1/html/_static/default.css
/usr/share/doc/BEDTools-2.27.1/html/_static/doctools.js
/usr/share/doc/BEDTools-2.27.1/html/_static/down-pressed.png
/usr/share/doc/BEDTools-2.27.1/html/_static/down.png
/usr/share/doc/BEDTools-2.27.1/html/_static/file.png
/usr/share/doc/BEDTools-2.27.1/html/_static/jquery-3.1.0.js
/usr/share/doc/BEDTools-2.27.1/html/_static/jquery.js
/usr/share/doc/BEDTools-2.27.1/html/_static/labibi.css
/usr/share/doc/BEDTools-2.27.1/html/_static/labibi.js
/usr/share/doc/BEDTools-2.27.1/html/_static/minus.png
/usr/share/doc/BEDTools-2.27.1/html/_static/plus.png
/usr/share/doc/BEDTools-2.27.1/html/_static/pygments.css
/usr/share/doc/BEDTools-2.27.1/html/_static/rtd.css
/usr/share/doc/BEDTools-2.27.1/html/_static/searchtools.js
/usr/share/doc/BEDTools-2.27.1/html/_static/sidebar.js
/usr/share/doc/BEDTools-2.27.1/html/_static/underscore-1.3.1.js
/usr/share/doc/BEDTools-2.27.1/html/_static/underscore.js
/usr/share/doc/BEDTools-2.27.1/html/_static/up-pressed.png
/usr/share/doc/BEDTools-2.27.1/html/_static/up.png
/usr/share/doc/BEDTools-2.27.1/html/_static/websupport.js
/usr/share/doc/BEDTools-2.27.1/html/content/advanced-usage.html
/usr/share/doc/BEDTools-2.27.1/html/content/bedtools-suite.html
/usr/share/doc/BEDTools-2.27.1/html/content/example-usage.html
/usr/share/doc/BEDTools-2.27.1/html/content/faq.html
/usr/share/doc/BEDTools-2.27.1/html/content/general-usage.html
/usr/share/doc/BEDTools-2.27.1/html/content/history.html
/usr/share/doc/BEDTools-2.27.1/html/content/installation.html
/usr/share/doc/BEDTools-2.27.1/html/content/overview.html
/usr/share/doc/BEDTools-2.27.1/html/content/quick-start.html
/usr/share/doc/BEDTools-2.27.1/html/content/related-tools.html
/usr/share/doc/BEDTools-2.27.1/html/content/tips-and-tricks.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/annotate.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bamtobed.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bamtofastq.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bed12tobed6.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bedpetobam.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bedtobam.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/closest.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/cluster.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/complement.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/coverage.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/expand.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/fisher.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/flank.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/genomecov.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/getfasta.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/groupby.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/igv.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/intersect.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/jaccard.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/links.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/makewindows.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/map.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/maskfasta.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/merge.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/multicov.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/multiinter.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/nuc.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/overlap.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/pairtobed.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/pairtopair.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/random.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/reldist.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/shift.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/shuffle.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/slop.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/sort.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/subtract.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/tag.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/unionbedg.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/window.html

See Also

Package Description
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BillardGL-1.75-alt1_3.i586.rpm 3D billard simulation using OpenGL
CGSI-gSOAP-1.3.11-alt1_3.i586.rpm GSI plugin for gSOAP
CGSI-gSOAP-devel-1.3.11-alt1_3.i586.rpm GSI plugin for gSOAP - development files
CTL-1.4.1-alt2_29.i586.rpm The Color Transformation Language
CTL-devel-1.4.1-alt2_29.i586.rpm Development files for CTL
Canna-3.7p3-alt1_56.i586.rpm A Japanese character set input system
Canna-devel-3.7p3-alt1_56.i586.rpm Header file and library for developing programs which use Canna
Canna-libs-3.7p3-alt1_56.i586.rpm The runtime library for Canna
DivFix++-0.34-alt1_27.i586.rpm Repair broken AVI file streams by rebuilding index part of file
E-2.1-alt1_2.i586.rpm Equational Theorem Prover
FUR-0.4.6-alt2_17.i586.rpm Mount a Windows CE based device on your Linux file system
Falcon-0.9.6.8-alt2_15.i586.rpm The Falcon Programming Language
Falcon-devel-0.9.6.8-alt2_15.i586.rpm Development files for Falcon
FlightCrew-cli-0.9.1-alt2_15.i586.rpm FlightCrew cli epub validator
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