staden-io_lib-1.12.4-alt1_15.i586.rpm


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Description

staden-io_lib - General purpose library to handle gene sequencing machine trace files

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports i586
Package filename staden-io_lib-1.12.4-alt1_15.i586.rpm
Package name staden-io_lib
Package version 1.12.4
Package release alt1_15
Package architecture i586
Package type rpm
Category System/Libraries
Homepage -
License -
Maintainer -
Download size 645.33 KB
Installed size 645.33 KB
The Staden I/O library provides a general purpose interface for reading and
writing trace files and other bioinformatics experiment files.  The programmer
simply calls, for example, the read_reading function to create a "Read" C
structure with the data loaded into memory.  It has been compiled and tested
on a variety of Unix systems, MacOS X and MS Windows.

Alternatives

Package Version Architecture Repository
staden-io_lib-1.12.4-alt1_15.x86_64.rpm 1.12.4 x86_64 Autoimports
staden-io_lib - - -

Requires

Name Value
/lib/ld-linux.so.2 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.1.3) -
libc.so.6(GLIBC_2.15) -
libc.so.6(GLIBC_2.2) -
libc.so.6(GLIBC_2.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libc.so.6(GLIBC_2.7) -
libcurl.so.4 -
libm.so.6(GLIBC_2.0) -
libz.so.1 -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -

Provides

Name Value
libstaden-read.so.1 -
staden-io_lib = 1.12.4-alt1_15

Download

Type URL
Mirror ftp.altlinux.org
Binary Package staden-io_lib-1.12.4-alt1_15.i586.rpm
Source Package staden-io_lib-1.12.4-alt1_15.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus i586 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install staden-io_lib rpm package:
    # sudo apt-get install staden-io_lib

Files

Path
/usr/bin/append_sff
/usr/bin/convert_trace
/usr/bin/extract_fastq
/usr/bin/extract_qual
/usr/bin/extract_seq
/usr/bin/get_comment
/usr/bin/hash_extract
/usr/bin/hash_list
/usr/bin/hash_sff
/usr/bin/hash_tar
/usr/bin/index_tar
/usr/bin/makeSCF
/usr/bin/scf_dump
/usr/bin/scf_info
/usr/bin/scf_update
/usr/bin/srf2fasta
/usr/bin/srf2fastq
/usr/bin/srf_dump_all
/usr/bin/srf_extract_hash
/usr/bin/srf_extract_linear
/usr/bin/srf_filter
/usr/bin/srf_index_hash
/usr/bin/srf_info
/usr/bin/srf_list
/usr/bin/trace_dump
/usr/bin/ztr_dump
/usr/lib/libstaden-read.so.1
/usr/lib/libstaden-read.so.1.1.2
/usr/share/doc/staden-io_lib-1.12.4/CHANGES
/usr/share/doc/staden-io_lib-1.12.4/COPYRIGHT
/usr/share/doc/staden-io_lib-1.12.4/README
/usr/share/doc/staden-io_lib-1.12.4/docs/Hash_File_Format
/usr/share/doc/staden-io_lib-1.12.4/docs/ZTR_format
/usr/share/man/man1/srf2fasta.1.xz
/usr/share/man/man1/srf2fastq.1.xz
/usr/share/man/man1/srf_index_hash.1.xz
/usr/share/man/man1/srf_info.1.xz
/usr/share/man/man1/srf_list.1.xz

See Also

Package Description
staden-io_lib-devel-1.12.4-alt1_15.i586.rpm Development files for staden-io_lib
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