wise2-2.4.1-alt1_8.i586.rpm


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Description

wise2 - Comparisons of DNA and protein sequences

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports i586
Package filename wise2-2.4.1-alt1_8.i586.rpm
Package name wise2
Package version 2.4.1
Package release alt1_8
Package architecture i586
Package type rpm
Category Sciences/Biology
Homepage -
License -
Maintainer -
Download size 9.57 MB
Installed size 9.57 MB
Wise2 is a package focused on comparisons of biopolymers, commonly DNA and
protein sequence. Wise2's particular forte is the comparison of DNA sequence
at the level of its protein translation. This comparison allows the simulta-
neous prediction of say gene structure with homology based alignment.
The Wise2 package was principally written by Ewan Birney, who wrote the main
genewise and estwise programs. The protein comparison database search program
was written by Richard Copley using the underlying Wise2 libraries.
Wise2 also uses code from Sean Eddy for reading HMMs and
for Extreme value distribution fitting.

Alternatives

Package Version Architecture Repository
wise2-2.4.1-alt1_8.x86_64.rpm 2.4.1 x86_64 Autoimports
wise2 - - -

Requires

Name Value
/lib/ld-linux.so.2 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libc.so.6(GLIBC_2.7) -
libglib-2.0.so.0 -
libm.so.6(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.1) -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -

Provides

Name Value
wise = 2.4.1
wise2 = 2.4.1-alt1_8

Obsoletes

Name Value
wise = 2.4.1-3.mga5

Download

Type URL
Mirror ftp.altlinux.org
Binary Package wise2-2.4.1-alt1_8.i586.rpm
Source Package wise2-2.4.1-alt1_8.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus i586 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install wise2 rpm package:
    # sudo apt-get install wise2

Files

Path
/etc/profile.d/wise.csh
/etc/profile.d/wise.sh
/usr/bin/dba
/usr/bin/dnal
/usr/bin/estwise
/usr/bin/estwisedb
/usr/bin/genewise
/usr/bin/genewisedb
/usr/bin/genomewise
/usr/bin/psw
/usr/bin/pswdb
/usr/share/doc/wise2-2.4.1/LICENSE
/usr/share/doc/wise2-2.4.1/README
/usr/share/doc/wise2-2.4.1/docs/README
/usr/share/doc/wise2-2.4.1/docs/apiend.tex
/usr/share/doc/wise2-2.4.1/docs/appendix.tex
/usr/share/doc/wise2-2.4.1/docs/dynamite.tex
/usr/share/doc/wise2-2.4.1/docs/genewise21.eps
/usr/share/doc/wise2-2.4.1/docs/genewise6.eps
/usr/share/doc/wise2-2.4.1/docs/gettex.pl
/usr/share/doc/wise2-2.4.1/docs/makefile
/usr/share/doc/wise2-2.4.1/docs/wise2.tex
/usr/share/doc/wise2-2.4.1/docs/wise2api.tex
/usr/share/doc/wise2-2.4.1/docs/wise3arch.tex
/usr/share/doc/wise2-2.4.1/docs/papers/alignment.bib
/usr/share/doc/wise2-2.4.1/docs/papers/promoterwise.tex
/usr/share/wise/BLOSUM30.bla
/usr/share/wise/BLOSUM45.bla
/usr/share/wise/BLOSUM62.bla
/usr/share/wise/BLOSUM80.bla
/usr/share/wise/aa.rnd
/usr/share/wise/cb.tmf
/usr/share/wise/codon.martian
/usr/share/wise/codon.table
/usr/share/wise/gene.stat
/usr/share/wise/gon120.bla
/usr/share/wise/gon160.bla
/usr/share/wise/gon200.bla
/usr/share/wise/gon250.bla
/usr/share/wise/gon350.bla
/usr/share/wise/human.gf
/usr/share/wise/human.gp
/usr/share/wise/human.stats
/usr/share/wise/idenity.bla
/usr/share/wise/methods
/usr/share/wise/pb.gf
/usr/share/wise/pombe.gf
/usr/share/wise/tm.pri
/usr/share/wise/wag55
/usr/share/wise/wag65
/usr/share/wise/wag75
/usr/share/wise/wag85
/usr/share/wise/wise.2
/usr/share/wise/wise.per
/usr/share/wise/worm.gf

See Also

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wmsmpmon-3.1-alt1_8.i586.rpm Another dock application to monitor multi-core systems
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wmstock-0.11-alt1_8.i586.rpm A dock application which displays stock quote data
wmwebcam-0.3.5-alt1_9.i586.rpm A dock application for your webcam
wnck-sharp-2.26.0-alt1_19.i586.rpm C# language binding for libwnck
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