perl-AlignAid-0.0.2-alt1.noarch.rpm


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Description

perl-AlignAid - easily run sequence alignments locally or on a cluster

Distribution: ALT Linux Sisyphus
Repository: Autoimports noarch
Package name: perl-AlignAid
Package version: 0.0.2
Package release: alt1
Package architecture: noarch
Package type: rpm
Installed size: 42.25 KB
Download size: 42.25 KB
Official Mirror: ftp.altlinux.org
AlignAid is designed to make it easy to run the sequence alignment programs Blast and cross_match. AlignAid can accept a large number of query sequences. If a compute cluster queue such as LSF or PBS is available, AlignAid can automatically split the queries into multiple queue jobs. Likewise, if you want to run the alignments locally on a single host, a single change is all that is necessary -- AlignAid will take care of how to invoke the alignment programs and manage the output. AlignAid also has rudimentary support for LSF queue job control; it is possible to kill jobs through AlignAid's interface.

Alternatives

Requires

Provides

  • perl(AlignAid.pm) = 0.0.002
  • perl-AlignAid = 0.0.2-alt1

    Install Howto

    1. Add the following line to /etc/apt/sources.list:
      rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
      rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
      
    2. Update the package index:
      # sudo apt-get update
    3. Install perl-AlignAid rpm package:
      # sudo apt-get install perl-AlignAid

    Files

    • /usr/share/doc/perl-AlignAid-0.0.2/Changes
    • /usr/share/doc/perl-AlignAid-0.0.2/LICENSE
    • /usr/share/doc/perl-AlignAid-0.0.2/README
    • /usr/share/perl5/AlignAid.pm
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