perl-AlignAid - easily run sequence alignments locally or on a cluster

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-AlignAid
Package version 0.0.2
Package release alt1
Package architecture noarch
Package type rpm
Installed size 42.25 KB
Download size 42.25 KB
Official Mirror
AlignAid is designed to make it easy to run the sequence alignment programs
Blast and cross_match. AlignAid can accept a large number of query sequences.
If a compute cluster queue such as LSF or PBS is available, AlignAid can
automatically split the queries into multiple queue jobs. Likewise, if you
want to run the alignments locally on a single host, a single change is all
that is necessary -- AlignAid will take care of how to invoke the alignment
programs and manage the output.
AlignAid also has rudimentary support for LSF queue job control; it is
possible to kill jobs through AlignAid's interface.


Package Version Architecture Repository
perl-AlignAid - - -


Name Value
/usr/share/perl5 -
perl(Bio/ -
perl(File/ -
perl(IO/ -
perl( -
rpmlib(PayloadIsLzma) -


Name Value
perl( = 0.0.002
perl-AlignAid = 0.0.2-alt1


Type URL
Binary Package perl-AlignAid-0.0.2-alt1.noarch.rpm
Source Package perl-AlignAid-0.0.2-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    rpm [Sisyphus] noarch autoimports
    rpm [Sisyphus] noarch autoimports
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-AlignAid rpm package:
    # sudo apt-get install perl-AlignAid



See Also

Package Description
perl-AlignDB-Codon-1.1.1-alt1.noarch.rpm translate sequences and calculate Dn/Ds
perl-AlignDB-DeltaG-1.1.0-alt1.noarch.rpm Calculate deltaG of polymer DNA sequences
perl-AlignDB-GC-1.1.0-alt1.noarch.rpm GC-related analysises
perl-AlignDB-IntSpan-1.1.1-alt1.noarch.rpm Handling of sets containing integer spans
perl-AlignDB-Run-1.0.2-alt1.noarch.rpm Run in parallel without pains
perl-AlignDB-SQL-1.0.2-alt1.noarch.rpm An SQL statement generator
perl-AlignDB-Stopwatch-1.1.0-alt1.noarch.rpm Record running time and print standard messages
perl-AlignDB-ToXLSX-1.2.1-alt1.noarch.rpm Create xlsx files from arrays or SQL queries
perl-AlignDB-Window-1.1.0-alt1.noarch.rpm Split integer spans into a series of windows
perl-Alister-Base-Sums-1.05-alt1.noarch.rpm subroutines for managing a sum disgest database table
perl-AllKnowingDNS-1.7-alt1.noarch.rpm ARRAY(0x1f70780)
perl-AllKnowingDNS-scripts-1.7-alt1.noarch.rpm AllKnowingDNS scripts
perl-Alt-0.19-alt1.noarch.rpm Alternate Module Implementations
perl-Alt-Alien-cmake3-System-0.0402-alt1.noarch.rpm Simplified alternative to Alien::cmake3 that uses system cmake
perl-Alt-Base-0.02-alt1.noarch.rpm Base class for alternate module