perl-Bio-Cellucidate-0.03-alt1.noarch.rpm


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Description

perl-Bio-Cellucidate - Perl library for cellucidate.com

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-Cellucidate
Package version 0.03
Package release alt1
Package architecture noarch
Package type rpm
Installed size 49.74 KB
Download size 49.74 KB
Official Mirror ftp.altlinux.org
Cellucidate is a tool for computation biologists to run simulations.  It is
based on the Kappa language.
The various objects in Cellucidate are arranged into a book metaphor.  The basic
hierarchy is:
Bookshelves
`-> Books
`-> Agents
`-> Rules
`-> Models
`-> Model Rules
`-> Initial Conditions
`-> Rule Observables
`-> Solution Observables
`-> Simulation Runs
`-> Ode Results
`-> Plots
`-> Series
Additionally, there are a few resources for auxiliary tasks, like importing
data and running various jobs the Cellucidate::KappaImportJob manpage.

Alternatives

Package Version Architecture Repository
perl-Bio-Cellucidate - - -

Requires

Name Value
/usr/share/perl5 -
perl(HTTP/Headers.pm) >= 5.827
perl(REST/Client.pm) >= 134.0
perl(XML/Simple.pm) >= 2.180
perl(base.pm) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Bio/Cellucidate.pm) = 0.030
perl(Bio/Cellucidate/Agent.pm) -
perl(Bio/Cellucidate/Base.pm) -
perl(Bio/Cellucidate/Book.pm) -
perl(Bio/Cellucidate/Bookshelf.pm) -
perl(Bio/Cellucidate/InitialCondition.pm) -
perl(Bio/Cellucidate/KappaImportJob.pm) -
perl(Bio/Cellucidate/Model.pm) -
perl(Bio/Cellucidate/ModelRule.pm) -
perl(Bio/Cellucidate/Plot.pm) -
perl(Bio/Cellucidate/Request.pm) -
perl(Bio/Cellucidate/Rule.pm) -
perl(Bio/Cellucidate/RuleObservable.pm) -
perl(Bio/Cellucidate/Series.pm) -
perl(Bio/Cellucidate/SimulationRun.pm) -
perl(Bio/Cellucidate/SolutionObservable.pm) -
perl-Bio-Cellucidate = 0.03-alt1

Download

Type URL
Binary Package perl-Bio-Cellucidate-0.03-alt1.noarch.rpm
Source Package perl-Bio-Cellucidate-0.03-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-Cellucidate rpm package:
    # sudo apt-get install perl-Bio-Cellucidate

Files

Path
/usr/share/doc/perl-Bio-Cellucidate-0.03/Changes
/usr/share/doc/perl-Bio-Cellucidate-0.03/README
/usr/share/doc/perl-Bio-Cellucidate-0.03/examples/full_example.pl
/usr/share/perl5/Bio/Cellucidate.pm
/usr/share/perl5/Bio/Cellucidate/Agent.pm
/usr/share/perl5/Bio/Cellucidate/Base.pm
/usr/share/perl5/Bio/Cellucidate/Book.pm
/usr/share/perl5/Bio/Cellucidate/Bookshelf.pm
/usr/share/perl5/Bio/Cellucidate/InitialCondition.pm
/usr/share/perl5/Bio/Cellucidate/KappaImportJob.pm
/usr/share/perl5/Bio/Cellucidate/Model.pm
/usr/share/perl5/Bio/Cellucidate/ModelRule.pm
/usr/share/perl5/Bio/Cellucidate/Plot.pm
/usr/share/perl5/Bio/Cellucidate/Request.pm
/usr/share/perl5/Bio/Cellucidate/Rule.pm
/usr/share/perl5/Bio/Cellucidate/RuleObservable.pm
/usr/share/perl5/Bio/Cellucidate/Series.pm
/usr/share/perl5/Bio/Cellucidate/SimulationRun.pm
/usr/share/perl5/Bio/Cellucidate/SolutionObservable.pm

See Also

Package Description
perl-Bio-Chado-Schema-0.20000-alt1.noarch.rpm A standard DBIx::Class layer for the Chado database schema
perl-Bio-Cigar-1.01-alt1.noarch.rpm Parse CIGAR strings and translate coordinates to/from reference/query
perl-Bio-DB-NextProt-1.05-alt1.noarch.rpm Object interface to NextProt REST API
perl-Bio-DB-USeq-0.24-alt1.noarch.rpm Read USeq archive database files
perl-Bio-DB-USeq-scripts-0.24-alt1.noarch.rpm Bio-DB-USeq scripts
perl-Bio-DNA-Incomplete-0.004-alt1.noarch.rpm Match incompletely specified bases in nucleic acid sequences
perl-Bio-DOOP-DOOP-1.04-alt1.noarch.rpm DOOP API main module
perl-Bio-Das-1.17-alt1.noarch.rpm Client-side library for Distributed Genome Annotation System
perl-Bio-Das-Lite-2.11-alt1.noarch.rpm Bio::Das::Lite is an implementation of the BioDas protocol, http://biodas.org/
perl-Bio-EBI-RNAseqAPI-1.04-alt1.noarch.rpm A Perl interface to the EMBL-EBI RNA-seq analysis API
perl-Bio-ECell-0.10-alt1.noarch.rpm Perl interface for E-Cell Simulation Environment
perl-Bio-EUtilities-1.73-alt1.noarch.rpm Webagent which interacts with and retrieves data from NCBI's eUtils
perl-Bio-EasyYang-1-alt1.noarch.rpm A tiny interface for Bio::Tools::Run::Phylo::PAML::Yn00 module
perl-Bio-FASTASequence-0.07-alt1.noarch.rpm Perl extension for Bioinformatics. Parsing sequence informations
perl-Bio-FASTASequence-File-0.04-alt1.noarch.rpm perl module Bio-FASTASequence-File
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