perl-Bio-DOOP-DOOP-1.04-alt1.noarch.rpm


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Description

perl-Bio-DOOP-DOOP - DOOP API main module

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-DOOP-DOOP
Package version 1.04
Package release alt1
Package architecture noarch
Package type rpm
Installed size 104.08 KB
Download size 104.08 KB
Official Mirror ftp.altlinux.org
DoOP is a database containing orthologous clusters of promoters from Homo sapiens,
Arabidopsis thaliana and other organisms. Visit the doop.abc.hu or doopsearch.abc.hu
sites for more information or read the following article.
Endre Barta, Endre Sebestyen, Tamas B. Palfy, Gabor Toth, Csaba P. Ortutay, and Laszlo Patthy
DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream
sequences from chordates and plants.
Nucl. Acids Res. 2005, Vol 33, Database issue D86-D90
This is a container module for all of the DOOP modules. You can simply use this module
to access all DOOP objects. For a more detailed help, use the documentation of the individual
objects.
If you would like to connect to the MySQL database of Agricultural Biotechnology Center (www.abc.hu),
use the following syntax.
$db = Bio::DOOP::DBSQL->connect("promoter", "sql04CP", "doop-choordate-1_4", "bioweb.abc.hu");

Alternatives

Package Version Architecture Repository
perl-Bio-DOOP-DOOP - - -

Requires

Name Value
/usr/share/perl5 -
perl(DBI.pm) >= 1.520
perl(GD.pm) >= 2.350
perl(POSIX.pm) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Bio/DOOP/Cluster.pm) = 0.120
perl(Bio/DOOP/ClusterSubset.pm) = 0.130
perl(Bio/DOOP/DBSQL.pm) = 0.060
perl(Bio/DOOP/DOOP.pm) = 1.040
perl(Bio/DOOP/Graphics/Feature.pm) = 0.180
perl(Bio/DOOP/Motif.pm) = 0.700
perl(Bio/DOOP/Sequence.pm) = 0.130
perl(Bio/DOOP/SequenceFeature.pm) = 0.100
perl(Bio/DOOP/Util/Filt.pm) = 0.300
perl(Bio/DOOP/Util/Run/Fuzznuc.pm) = 0.700
perl(Bio/DOOP/Util/Run/GeneMerge.pm) = 0.020
perl(Bio/DOOP/Util/Run/Mofext.pm) = 0.170
perl(Bio/DOOP/Util/Search.pm) = 0.130
perl(Bio/DOOP/Util/Sort.pm) = 0.300
perl-Bio-DOOP-DOOP = 1.04-alt1

Download

Type URL
Binary Package perl-Bio-DOOP-DOOP-1.04-alt1.noarch.rpm
Source Package perl-Bio-DOOP-DOOP-1.04-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-DOOP-DOOP rpm package:
    # sudo apt-get install perl-Bio-DOOP-DOOP

Files

Path
/usr/share/doc/perl-Bio-DOOP-DOOP-1.04/Changes
/usr/share/doc/perl-Bio-DOOP-DOOP-1.04/README
/usr/share/perl5/Bio/
/usr/share/perl5/Bio/DOOP/Cluster.pm
/usr/share/perl5/Bio/DOOP/ClusterSubset.pm
/usr/share/perl5/Bio/DOOP/DBSQL.pm
/usr/share/perl5/Bio/DOOP/DOOP.pm
/usr/share/perl5/Bio/DOOP/Motif.pm
/usr/share/perl5/Bio/DOOP/Sequence.pm
/usr/share/perl5/Bio/DOOP/SequenceFeature.pm
/usr/share/perl5/Bio/DOOP/Graphics/Feature.pm
/usr/share/perl5/Bio/DOOP/Util/Filt.pm
/usr/share/perl5/Bio/DOOP/Util/Search.pm
/usr/share/perl5/Bio/DOOP/Util/Sort.pm
/usr/share/perl5/Bio/DOOP/Util/Run/Fuzznuc.pm
/usr/share/perl5/Bio/DOOP/Util/Run/GeneMerge.pm
/usr/share/perl5/Bio/DOOP/Util/Run/Mofext.pm

See Also

Package Description
perl-Bio-Das-1.17-alt1.noarch.rpm Client-side library for Distributed Genome Annotation System
perl-Bio-Das-Lite-2.11-alt1.noarch.rpm Bio::Das::Lite is an implementation of the BioDas protocol, http://biodas.org/
perl-Bio-EBI-RNAseqAPI-1.04-alt1.noarch.rpm A Perl interface to the EMBL-EBI RNA-seq analysis API
perl-Bio-ECell-0.10-alt1.noarch.rpm Perl interface for E-Cell Simulation Environment
perl-Bio-EUtilities-1.73-alt1.noarch.rpm Webagent which interacts with and retrieves data from NCBI's eUtils
perl-Bio-EasyYang-1-alt1.noarch.rpm A tiny interface for Bio::Tools::Run::Phylo::PAML::Yn00 module
perl-Bio-FASTASequence-0.07-alt1.noarch.rpm Perl extension for Bioinformatics. Parsing sequence informations
perl-Bio-FASTASequence-File-0.04-alt1.noarch.rpm perl module Bio-FASTASequence-File
perl-Bio-FdrFet-0.05-alt1.noarch.rpm Perl extension for False Discovery Rate and Fisher Exact Test applied to pathway analysis
perl-Bio-FdrFet-scripts-0.05-alt1.noarch.rpm Bio-FdrFet scripts
perl-Bio-GFF3-2.0-alt1.noarch.rpm fast, low-level GFF3 manipulation
perl-Bio-GFF3-scripts-2.0-alt1.noarch.rpm Bio-GFF3 scripts
perl-Bio-GMOD-Blast-Graph-0.06-alt1.noarch.rpm display a graphical summary of a BLAST report
perl-Bio-GenBankParser-0.05-alt1.noarch.rpm Parse::RecDescent parser for a GenBank record
perl-Bio-Glite-0.10-alt1.noarch.rpm G-language Genome Analysis Environment REST service interface module
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