perl-Bio-Graphics-2.25-alt1_6.noarch.rpm


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Description

perl-Bio-Graphics - Generate GD images of Bio::Seq objects

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-Graphics
Package version 2.25
Package release alt1_6
Package architecture noarch
Package type rpm
Installed size 1.11 MB
Download size 1.11 MB
Official Mirror ftp.altlinux.org
Bio::Graphics is a simple GD-based renderer (diagram drawer) for DNA
and protein sequences.  The Bio::Graphics::Panel class provides
drawing and formatting services for any object that implements the
Bio::SeqFeatureI interface, including Ace::Sequence::Feature,
Das::Segment::Feature and Bio::DB::Graphics objects.  It can be used
to draw sequence annotations, physical (contig) maps, protein domains,
or any other type of map in which a set of discrete ranges need to be
laid out on the number line

Alternatives

Package Version Architecture Repository
perl-Bio-Graphics - - -

Requires

Name Value
/usr/bin/perl -
/usr/share/perl5 -
perl(Bio/AlignIO.pm) -
perl(Bio/Assembly/IO.pm) -
perl(Bio/DB/GFF/Util/Rearrange.pm) -
perl(Bio/DB/SeqFeature/Store.pm) -
perl(Bio/Root/Root.pm) -
perl(Bio/Root/RootI.pm) -
perl(Bio/Root/Version.pm) -
perl(Bio/SearchIO.pm) -
perl(Bio/SeqFeature/Generic.pm) -
perl(Bio/SeqFeature/Lite.pm) -
perl(Bio/SeqIO.pm) -
perl(Bio/Tools/GuessSeqFormat.pm) -
perl(CGI.pm) -
perl(CGI/Carp.pm) -
perl(Cwd.pm) -
perl(Dumpvalue.pm) -
perl(File/Basename.pm) -
perl(File/Glob.pm) -
perl(File/Path.pm) -
perl(File/Spec.pm) -
perl(File/Temp.pm) -
perl(File/stat.pm) -
perl(GD.pm) -
perl(Getopt/Long.pm) -
perl(IO/Dir.pm) -
perl(IO/File.pm) -
perl(IO/Seekable.pm) -
perl(Memoize.pm) -
perl(SVG.pm) >= 2.260
perl(Statistics/Descriptive.pm) -
perl(Text/ParseWords.pm) -
perl(base.pm) -
perl(constant.pm) -
perl(lib.pm) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Bio/Graphics.pm) = 2.250
perl(Bio/Graphics/ConfiguratorI.pm) -
perl(Bio/Graphics/DrawTransmembrane.pm) -
perl(Bio/Graphics/Feature.pm) -
perl(Bio/Graphics/FeatureBase.pm) -
perl(Bio/Graphics/FeatureDir.pm) -
perl(Bio/Graphics/FeatureFile.pm) -
perl(Bio/Graphics/FeatureFile/Iterator.pm) -
perl(Bio/Graphics/Glyph.pm) -
perl(Bio/Graphics/Glyph/Factory.pm) -
perl(Bio/Graphics/Glyph/alignment.pm) -
perl(Bio/Graphics/Glyph/allele_tower.pm) -
perl(Bio/Graphics/Glyph/anchored_arrow.pm) -
perl(Bio/Graphics/Glyph/arrow.pm) -
perl(Bio/Graphics/Glyph/box.pm) -
perl(Bio/Graphics/Glyph/broken_line.pm) -
perl(Bio/Graphics/Glyph/cds.pm) -
perl(Bio/Graphics/Glyph/christmas_arrow.pm) -
perl(Bio/Graphics/Glyph/cross.pm) -
perl(Bio/Graphics/Glyph/crossbox.pm) -
perl(Bio/Graphics/Glyph/dashed_line.pm) -
perl(Bio/Graphics/Glyph/diamond.pm) -
perl(Bio/Graphics/Glyph/dna.pm) -
perl(Bio/Graphics/Glyph/dot.pm) -
perl(Bio/Graphics/Glyph/dumbbell.pm) -
perl(Bio/Graphics/Glyph/ellipse.pm) -
perl(Bio/Graphics/Glyph/ex.pm) -
perl(Bio/Graphics/Glyph/extending_arrow.pm) -
perl(Bio/Graphics/Glyph/fixedwidth.pm) -
perl(Bio/Graphics/Glyph/flag.pm) -
perl(Bio/Graphics/Glyph/gene.pm) -
perl(Bio/Graphics/Glyph/generic.pm) -
perl(Bio/Graphics/Glyph/graded_segments.pm) -
perl(Bio/Graphics/Glyph/group.pm) -
perl(Bio/Graphics/Glyph/hat.pm) -
perl(Bio/Graphics/Glyph/heat_map.pm) -
perl(Bio/Graphics/Glyph/heat_map_ideogram.pm) -
perl(Bio/Graphics/Glyph/heterogeneous_segments.pm) -
perl(Bio/Graphics/Glyph/hidden.pm) -
perl(Bio/Graphics/Glyph/hybrid_plot.pm) = 1.0
perl(Bio/Graphics/Glyph/ideogram.pm) -
perl(Bio/Graphics/Glyph/image.pm) -
perl(Bio/Graphics/Glyph/lightning.pm) -
perl(Bio/Graphics/Glyph/line.pm) -
perl(Bio/Graphics/Glyph/merge_parts.pm) -
perl(Bio/Graphics/Glyph/merged_alignment.pm) -
perl(Bio/Graphics/Glyph/minmax.pm) -
perl(Bio/Graphics/Glyph/operon.pm) -
perl(Bio/Graphics/Glyph/oval.pm) -
perl(Bio/Graphics/Glyph/pairplot.pm) -
perl(Bio/Graphics/Glyph/pentagram.pm) -
perl(Bio/Graphics/Glyph/phylo_align.pm) -
perl(Bio/Graphics/Glyph/pinsertion.pm) -
perl(Bio/Graphics/Glyph/primers.pm) -
perl(Bio/Graphics/Glyph/processed_transcript.pm) -
perl(Bio/Graphics/Glyph/protein.pm) -
perl(Bio/Graphics/Glyph/ragged_ends.pm) -
perl(Bio/Graphics/Glyph/rainbow_gene.pm) -
perl(Bio/Graphics/Glyph/read_pair.pm) -
perl(Bio/Graphics/Glyph/redgreen_box.pm) -
perl(Bio/Graphics/Glyph/redgreen_segment.pm) -
perl(Bio/Graphics/Glyph/repeating_shape.pm) -
perl(Bio/Graphics/Glyph/rndrect.pm) -
perl(Bio/Graphics/Glyph/ruler_arrow.pm) -
perl(Bio/Graphics/Glyph/saw_teeth.pm) -
perl(Bio/Graphics/Glyph/segmented_keyglyph.pm) -
perl(Bio/Graphics/Glyph/segments.pm) -
perl(Bio/Graphics/Glyph/smoothing.pm) -
perl(Bio/Graphics/Glyph/so_transcript.pm) -
perl(Bio/Graphics/Glyph/span.pm) -
perl(Bio/Graphics/Glyph/spectrogram.pm) -
perl(Bio/Graphics/Glyph/splice_site.pm) -
perl(Bio/Graphics/Glyph/stackedplot.pm) -
perl(Bio/Graphics/Glyph/ternary_plot.pm) -
perl(Bio/Graphics/Glyph/text_in_box.pm) -
perl(Bio/Graphics/Glyph/three_letters.pm) -
perl(Bio/Graphics/Glyph/tic_tac_toe.pm) -
perl(Bio/Graphics/Glyph/toomany.pm) -
perl(Bio/Graphics/Glyph/track.pm) -
perl(Bio/Graphics/Glyph/transcript.pm) -
perl(Bio/Graphics/Glyph/transcript2.pm) -
perl(Bio/Graphics/Glyph/translation.pm) -
perl(Bio/Graphics/Glyph/triangle.pm) -
perl(Bio/Graphics/Glyph/two_bolts.pm) -
perl(Bio/Graphics/Glyph/vista_plot.pm) = 1.0
perl(Bio/Graphics/Glyph/wave.pm) -
perl(Bio/Graphics/Glyph/weighted_arrow.pm) -
perl(Bio/Graphics/Glyph/whiskerplot.pm) -
perl(Bio/Graphics/Glyph/wiggle_box.pm) -
perl(Bio/Graphics/Glyph/wiggle_density.pm) -
perl(Bio/Graphics/Glyph/wiggle_minmax.pm) -
perl(Bio/Graphics/Glyph/wiggle_whiskers.pm) -
perl(Bio/Graphics/Glyph/wiggle_xyplot.pm) -
perl(Bio/Graphics/Glyph/xyplot.pm) -
perl(Bio/Graphics/Layout.pm) -
perl(Bio/Graphics/Panel.pm) -
perl(Bio/Graphics/Pictogram.pm) -
perl(Bio/Graphics/RendererI.pm) -
perl(Bio/Graphics/Util.pm) -
perl(Bio/Graphics/Wiggle.pm) = 1.0
perl(Bio/Graphics/Wiggle/Loader.pm) -
perl-Bio-Graphics = 2.25-alt1_6

Download

Type URL
Binary Package perl-Bio-Graphics-2.25-alt1_6.noarch.rpm
Source Package perl-Bio-Graphics-2.25-alt1_6.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-Graphics rpm package:
    # sudo apt-get install perl-Bio-Graphics

Files

Path
/usr/bin/contig_draw.pl
/usr/bin/feature_draw.pl
/usr/bin/frend.pl
/usr/bin/glyph_help.pl
/usr/bin/render_msa.pl
/usr/bin/search_overview.pl
/usr/share/doc/perl-Bio-Graphics-2.25/Changes
/usr/share/doc/perl-Bio-Graphics-2.25/DISCLAIMER.txt
/usr/share/doc/perl-Bio-Graphics-2.25/README
/usr/share/doc/perl-Bio-Graphics-2.25/README.bioperl
/usr/share/man/man1/contig_draw.pl.1.gz
/usr/share/man/man1/feature_draw.pl.1.gz
/usr/share/man/man1/frend.pl.1.gz
/usr/share/man/man1/search_overview.pl.1.gz
/usr/share/perl5/Bio/Graphics.pm
/usr/share/perl5/Bio/Graphics/ConfiguratorI.pm
/usr/share/perl5/Bio/Graphics/DrawTransmembrane.pm
/usr/share/perl5/Bio/Graphics/Feature.pm
/usr/share/perl5/Bio/Graphics/FeatureBase.pm
/usr/share/perl5/Bio/Graphics/FeatureDir.pm
/usr/share/perl5/Bio/Graphics/FeatureFile.pm
/usr/share/perl5/Bio/Graphics/Glyph.pm
/usr/share/perl5/Bio/Graphics/Layout.pm
/usr/share/perl5/Bio/Graphics/Panel.pm
/usr/share/perl5/Bio/Graphics/Pictogram.pm
/usr/share/perl5/Bio/Graphics/RendererI.pm
/usr/share/perl5/Bio/Graphics/Util.pm
/usr/share/perl5/Bio/Graphics/Wiggle.pm
/usr/share/perl5/Bio/Graphics/FeatureFile/Iterator.pm
/usr/share/perl5/Bio/Graphics/Glyph/Factory.pm
/usr/share/perl5/Bio/Graphics/Glyph/alignment.pm
/usr/share/perl5/Bio/Graphics/Glyph/allele_tower.pm
/usr/share/perl5/Bio/Graphics/Glyph/anchored_arrow.pm
/usr/share/perl5/Bio/Graphics/Glyph/arrow.pm
/usr/share/perl5/Bio/Graphics/Glyph/box.pm
/usr/share/perl5/Bio/Graphics/Glyph/broken_line.pm
/usr/share/perl5/Bio/Graphics/Glyph/cds.pm
/usr/share/perl5/Bio/Graphics/Glyph/christmas_arrow.pm
/usr/share/perl5/Bio/Graphics/Glyph/cross.pm
/usr/share/perl5/Bio/Graphics/Glyph/crossbox.pm
/usr/share/perl5/Bio/Graphics/Glyph/dashed_line.pm
/usr/share/perl5/Bio/Graphics/Glyph/diamond.pm
/usr/share/perl5/Bio/Graphics/Glyph/dna.pm
/usr/share/perl5/Bio/Graphics/Glyph/dot.pm
/usr/share/perl5/Bio/Graphics/Glyph/dumbbell.pm
/usr/share/perl5/Bio/Graphics/Glyph/ellipse.pm
/usr/share/perl5/Bio/Graphics/Glyph/ex.pm
/usr/share/perl5/Bio/Graphics/Glyph/extending_arrow.pm
/usr/share/perl5/Bio/Graphics/Glyph/fixedwidth.pm
/usr/share/perl5/Bio/Graphics/Glyph/flag.pm
/usr/share/perl5/Bio/Graphics/Glyph/gene.pm
/usr/share/perl5/Bio/Graphics/Glyph/generic.pm
/usr/share/perl5/Bio/Graphics/Glyph/graded_segments.pm
/usr/share/perl5/Bio/Graphics/Glyph/group.pm
/usr/share/perl5/Bio/Graphics/Glyph/hat.pm
/usr/share/perl5/Bio/Graphics/Glyph/heat_map.pm
/usr/share/perl5/Bio/Graphics/Glyph/heat_map_ideogram.pm
/usr/share/perl5/Bio/Graphics/Glyph/heterogeneous_segments.pm
/usr/share/perl5/Bio/Graphics/Glyph/hidden.pm
/usr/share/perl5/Bio/Graphics/Glyph/hybrid_plot.pm
/usr/share/perl5/Bio/Graphics/Glyph/ideogram.pm
/usr/share/perl5/Bio/Graphics/Glyph/image.pm
/usr/share/perl5/Bio/Graphics/Glyph/lightning.pm
/usr/share/perl5/Bio/Graphics/Glyph/line.pm
/usr/share/perl5/Bio/Graphics/Glyph/merge_parts.pm
/usr/share/perl5/Bio/Graphics/Glyph/merged_alignment.pm
/usr/share/perl5/Bio/Graphics/Glyph/minmax.pm
/usr/share/perl5/Bio/Graphics/Glyph/operon.pm
/usr/share/perl5/Bio/Graphics/Glyph/oval.pm
/usr/share/perl5/Bio/Graphics/Glyph/pairplot.pm
/usr/share/perl5/Bio/Graphics/Glyph/pentagram.pm
/usr/share/perl5/Bio/Graphics/Glyph/phylo_align.pm
/usr/share/perl5/Bio/Graphics/Glyph/pinsertion.pm
/usr/share/perl5/Bio/Graphics/Glyph/primers.pm
/usr/share/perl5/Bio/Graphics/Glyph/processed_transcript.pm
/usr/share/perl5/Bio/Graphics/Glyph/protein.pm
/usr/share/perl5/Bio/Graphics/Glyph/ragged_ends.pm
/usr/share/perl5/Bio/Graphics/Glyph/rainbow_gene.pm
/usr/share/perl5/Bio/Graphics/Glyph/read_pair.pm
/usr/share/perl5/Bio/Graphics/Glyph/redgreen_box.pm
/usr/share/perl5/Bio/Graphics/Glyph/redgreen_segment.pm
/usr/share/perl5/Bio/Graphics/Glyph/repeating_shape.pm
/usr/share/perl5/Bio/Graphics/Glyph/rndrect.pm
/usr/share/perl5/Bio/Graphics/Glyph/ruler_arrow.pm
/usr/share/perl5/Bio/Graphics/Glyph/saw_teeth.pm
/usr/share/perl5/Bio/Graphics/Glyph/segmented_keyglyph.pm
/usr/share/perl5/Bio/Graphics/Glyph/segments.pm
/usr/share/perl5/Bio/Graphics/Glyph/smoothing.pm
/usr/share/perl5/Bio/Graphics/Glyph/so_transcript.pm
/usr/share/perl5/Bio/Graphics/Glyph/span.pm
/usr/share/perl5/Bio/Graphics/Glyph/spectrogram.pm
/usr/share/perl5/Bio/Graphics/Glyph/splice_site.pm
/usr/share/perl5/Bio/Graphics/Glyph/stackedplot.pm
/usr/share/perl5/Bio/Graphics/Glyph/ternary_plot.pm
/usr/share/perl5/Bio/Graphics/Glyph/text_in_box.pm
/usr/share/perl5/Bio/Graphics/Glyph/three_letters.pm
/usr/share/perl5/Bio/Graphics/Glyph/tic_tac_toe.pm
/usr/share/perl5/Bio/Graphics/Glyph/toomany.pm
/usr/share/perl5/Bio/Graphics/Glyph/track.pm
/usr/share/perl5/Bio/Graphics/Glyph/transcript.pm
/usr/share/perl5/Bio/Graphics/Glyph/transcript2.pm
/usr/share/perl5/Bio/Graphics/Glyph/translation.pm
/usr/share/perl5/Bio/Graphics/Glyph/triangle.pm
/usr/share/perl5/Bio/Graphics/Glyph/two_bolts.pm
/usr/share/perl5/Bio/Graphics/Glyph/vista_plot.pm
/usr/share/perl5/Bio/Graphics/Glyph/wave.pm
/usr/share/perl5/Bio/Graphics/Glyph/weighted_arrow.pm
/usr/share/perl5/Bio/Graphics/Glyph/whiskerplot.pm
/usr/share/perl5/Bio/Graphics/Glyph/wiggle_box.pm
/usr/share/perl5/Bio/Graphics/Glyph/wiggle_density.pm
/usr/share/perl5/Bio/Graphics/Glyph/wiggle_minmax.pm
/usr/share/perl5/Bio/Graphics/Glyph/wiggle_whiskers.pm
/usr/share/perl5/Bio/Graphics/Glyph/wiggle_xyplot.pm
/usr/share/perl5/Bio/Graphics/Glyph/xyplot.pm
/usr/share/perl5/Bio/Graphics/Wiggle/Loader.pm

See Also

Package Description
perl-Bio-Graphics-Glyph-decorated_gene-0.03-alt1.noarch.rpm perl module Bio-Graphics-Glyph-decorated_gene
perl-Bio-Grep-0.10.6-alt1.noarch.rpm Perl extension for searching in DNA and Protein sequences
perl-Bio-Grep-scripts-0.10.6-alt1.noarch.rpm Bio-Grep scripts
perl-Bio-IlluminaSAV-1.0.9706-alt2.noarch.rpm Bio::IlluminaSAV - Parse Illumina SAV files
perl-Bio-JBrowse-Store-NCList-0.1-alt1.noarch.rpm modules for formatting JSON nested containment lists for use with JBrowse
perl-Bio-KEGGI-0.1.50-alt1.noarch.rpm Module to handle KEGG genome, ko and pathway files
perl-Bio-Kmer-0.21-alt1.noarch.rpm >new("file.fastq.gz",{kmercounter=>"jellyfish",numcpus=>4});
perl-Bio-LITE-Taxonomy-0.07-alt1.noarch.rpm Lightweight and efficient taxonomic tree manager
perl-Bio-LITE-Taxonomy-NCBI-0.1-alt2.noarch.rpm Lightweight and efficient NCBI taxonomic manager
perl-Bio-LITE-Taxonomy-NCBI-Gi2taxid-0.13-alt1.noarch.rpm Mappings of NCBI GI's to Taxids fast and with very low memory footprint
perl-Bio-LITE-Taxonomy-RDP-0.03-alt1.noarch.rpm Lightweight and efficient RDP taxonomic manager
perl-Bio-Lite-0.003-alt1.noarch.rpm Lightweight and fast module with a simplified API to ease scripting in bioinformatics
perl-Bio-MAGE-20030502.3-alt1.noarch.rpm perl module Bio-MAGE
perl-Bio-MAGE-Utils-20030502.0-alt1.noarch.rpm perl module Bio-MAGE-Utils
perl-Bio-MaxQuant-Evidence-Statistics-0.01-alt1.noarch.rpm Additional statistics on your SILAC evidence
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