perl-Bio-Grep-0.10.6-alt1.noarch.rpm


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Description

perl-Bio-Grep - Perl extension for searching in DNA and Protein sequences

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-Grep
Package version 0.10.6
Package release alt1
Package architecture noarch
Package type rpm
Installed size 203.94 KB
Download size 203.94 KB
Official Mirror ftp.altlinux.org
Bio-Grep is a collection of Perl modules for searching in
DNA and Protein sequences. It supports different back-ends, most importantly
some (enhanced) suffix array implementations. Currently, there is no suffix
array tool that works in all scenarios (for example whole genome, protein and
RNA data). `Bio::Grep' provides a common API to the most popular tools. This
way, you can easily switch or combine tools.

Alternatives

Package Version Architecture Repository
perl-Bio-Grep - - -

Requires

Name Value
/usr/share/perl5 -
perl(Bio/AlignIO.pm) -
perl(Bio/Factory/EMBOSS.pm) -
perl(Bio/Index/Fasta.pm) -
perl(Bio/Root/Root.pm) -
perl(Bio/Seq.pm) -
perl(Bio/SeqIO.pm) -
perl(Carp/Assert.pm) -
perl(Class/MethodMaker.pm) >= 2.020
perl(Cwd.pm) -
perl(Data/Dumper.pm) -
perl(English.pm) -
perl(File/Basename.pm) -
perl(File/Copy.pm) -
perl(File/Spec.pm) -
perl(File/Temp.pm) -
perl(IO/String.pm) >= 1.0
perl(IPC/Open3.pm) -
perl(List/Util.pm) -
perl(Readonly.pm) -
perl(Scalar/Util.pm) -
perl(UNIVERSAL.pm) -
perl(UNIVERSAL/require.pm) >= 0.110
perl(autodie.pm) -
perl(base.pm) -
perl(version.pm) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Bio/Grep.pm) = 0.010.006
perl(Bio/Grep/Backend/Agrep.pm) = 0.010.006
perl(Bio/Grep/Backend/BackendI.pm) = 0.010.006
perl(Bio/Grep/Backend/GUUGle.pm) = 0.010.006
perl(Bio/Grep/Backend/RE.pm) = 0.010.006
perl(Bio/Grep/Backend/Vmatch.pm) = 0.010.006
perl(Bio/Grep/Filter/FilterI.pm) = 0.010.006
perl(Bio/Grep/Filter/FilterRemoveDuplicates.pm) = 0.010.006
perl(Bio/Grep/Root.pm) = 0.010.006
perl(Bio/Grep/SearchResult.pm) = 0.010.006
perl(Bio/Grep/SearchSettings.pm) = 0.010.006
perl-Bio-Grep = 0.10.6-alt1

Download

Type URL
Binary Package perl-Bio-Grep-0.10.6-alt1.noarch.rpm
Source Package perl-Bio-Grep-0.10.6-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-Grep rpm package:
    # sudo apt-get install perl-Bio-Grep

Files

Path
/usr/share/doc/perl-Bio-Grep-0.10.6/Changes
/usr/share/doc/perl-Bio-Grep-0.10.6/LICENSE
/usr/share/doc/perl-Bio-Grep-0.10.6/README
/usr/share/doc/perl-Bio-Grep-0.10.6/TODO
/usr/share/doc/perl-Bio-Grep-0.10.6/examples/Benchmarks.tt
/usr/share/doc/perl-Bio-Grep-0.10.6/examples/benchmark.pl
/usr/share/doc/perl-Bio-Grep-0.10.6/examples/bgrep
/usr/share/perl5/Bio/Grep.pm
/usr/share/perl5/Bio/Grep/Benchmarks.pod
/usr/share/perl5/Bio/Grep/Cookbook.pod
/usr/share/perl5/Bio/Grep/Root.pm
/usr/share/perl5/Bio/Grep/SearchResult.pm
/usr/share/perl5/Bio/Grep/SearchSettings.pm
/usr/share/perl5/Bio/Grep/Backend/Agrep.pm
/usr/share/perl5/Bio/Grep/Backend/BackendI.pm
/usr/share/perl5/Bio/Grep/Backend/GUUGle.pm
/usr/share/perl5/Bio/Grep/Backend/RE.pm
/usr/share/perl5/Bio/Grep/Backend/Vmatch.pm
/usr/share/perl5/Bio/Grep/Filter/FilterI.pm
/usr/share/perl5/Bio/Grep/Filter/FilterRemoveDuplicates.pm

See Also

Package Description
perl-Bio-Grep-scripts-0.10.6-alt1.noarch.rpm Bio-Grep scripts
perl-Bio-IlluminaSAV-1.0.9706-alt2.noarch.rpm Bio::IlluminaSAV - Parse Illumina SAV files
perl-Bio-JBrowse-Store-NCList-0.1-alt1.noarch.rpm modules for formatting JSON nested containment lists for use with JBrowse
perl-Bio-KEGGI-0.1.50-alt1.noarch.rpm Module to handle KEGG genome, ko and pathway files
perl-Bio-Kmer-0.21-alt1.noarch.rpm >new("file.fastq.gz",{kmercounter=>"jellyfish",numcpus=>4});
perl-Bio-LITE-Taxonomy-0.07-alt1.noarch.rpm Lightweight and efficient taxonomic tree manager
perl-Bio-LITE-Taxonomy-NCBI-0.1-alt2.noarch.rpm Lightweight and efficient NCBI taxonomic manager
perl-Bio-LITE-Taxonomy-NCBI-Gi2taxid-0.13-alt1.noarch.rpm Mappings of NCBI GI's to Taxids fast and with very low memory footprint
perl-Bio-LITE-Taxonomy-RDP-0.03-alt1.noarch.rpm Lightweight and efficient RDP taxonomic manager
perl-Bio-Lite-0.003-alt1.noarch.rpm Lightweight and fast module with a simplified API to ease scripting in bioinformatics
perl-Bio-MAGE-20030502.3-alt1.noarch.rpm perl module Bio-MAGE
perl-Bio-MAGE-Utils-20030502.0-alt1.noarch.rpm perl module Bio-MAGE-Utils
perl-Bio-MaxQuant-Evidence-Statistics-0.01-alt1.noarch.rpm Additional statistics on your SILAC evidence
perl-Bio-MaxQuant-ProteinGroups-Response-0.04-alt1.noarch.rpm Analyze MQ proteinGroups for differential responses
perl-Bio-Maxd-0.04-alt1.noarch.rpm Perl extension for storing and retrieving data from maxd
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