perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan-0.05-alt1.noarch.rpm


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Description

perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan - Perl module for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burg

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan
Package version 0.05
Package release alt1
Package architecture noarch
Package type rpm
Installed size 2.93 MB
Download size 2.93 MB
Official Mirror ftp.altlinux.org
This module scores 5' and 3' splice sites using the maxEntScan algorithm.  See the original publication (citattion below) for details on the scoring algorithm.

Alternatives

Package Version Architecture Repository
perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan - - -

Requires

Name Value
/usr/share/perl5 -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Bio/RNA/SpliceSites/Scoring/MaxEntScan.pm) = 0.050
perl(Bio/RNA/SpliceSites/Scoring/me2x3acc.pm) -
perl(Bio/RNA/SpliceSites/Scoring/me2x5.pm) -
perl(Bio/RNA/SpliceSites/Scoring/splice5sequences.pm) -
perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan = 0.05-alt1

Download

Type URL
Binary Package perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan-0.05-alt1.noarch.rpm
Source Package perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan-0.05-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan rpm package:
    # sudo apt-get install perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan

Files

Path
/usr/share/doc/perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan-0.05/Changes
/usr/share/doc/perl-Bio-RNA-SpliceSites-Scoring-MaxEntScan-0.05/README
/usr/share/perl5/Bio/
/usr/share/perl5/Bio/RNA/
/usr/share/perl5/Bio/RNA/SpliceSites/
/usr/share/perl5/Bio/RNA/SpliceSites/Scoring/MaxEntScan.pm
/usr/share/perl5/Bio/RNA/SpliceSites/Scoring/me2x3acc.pm
/usr/share/perl5/Bio/RNA/SpliceSites/Scoring/me2x5.pm
/usr/share/perl5/Bio/RNA/SpliceSites/Scoring/splice5sequences.pm

See Also

Package Description
perl-Bio-Regexp-0.101-alt1.noarch.rpm Exhaustive DNA/RNA/protein regexp searches
perl-Bio-Resistome-1.123560-alt1.noarch.rpm Antibiotic resistome gene database
perl-Bio-Resistome-scripts-1.123560-alt1.noarch.rpm Bio-Resistome scripts
perl-Bio-SAGE-Comparison-1.00-alt1.noarch.rpm Compares data from serial analysis of gene expression (SAGE) libraries
perl-Bio-SAGE-DataProcessing-1.20-alt1.noarch.rpm Processes raw serial analysis of gene expression (SAGE) data
perl-Bio-SDRS-0.11-alt1.noarch.rpm Perl extension for Sigmoidal Dose Response Search, a tool
perl-Bio-SDRS-scripts-0.11-alt1.noarch.rpm Bio-SDRS scripts
perl-Bio-SFF-0.007-alt1.noarch.rpm Standard Flowgram Format for Perl
perl-Bio-SSRTool-0.04-alt1.noarch.rpm The great new Bio::SSRTool!
perl-Bio-SeqHash-0.1.4-alt1.noarch.rpm get one or more sequences from a FASTA file quickly
perl-Bio-SeqReader-0.1.3-alt2_8.noarch.rpm Class providing methods for representing header,
perl-Bio-Taxonomy-GlobalNames-0.07-alt1.noarch.rpm Perlish OO bindings to the L<Global Names Resolver|http://resolver.globalnames.org/> API
perl-Bio-Tools-Alignment-Overview-0.36-alt1.noarch.rpm just another represetation for biological sequence alignment
perl-Bio-Tools-CodonOptTable-1.05-alt1.noarch.rpm A more elaborative way to check the codons usage!
perl-Bio-Tools-Primer3Redux-0.09-alt1.noarch.rpm BioPerl-based tools for Primer3 (redone)
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