perl-Bio-SeqHash-0.1.4-alt1.noarch.rpm


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Description

perl-Bio-SeqHash - get one or more sequences from a FASTA file quickly

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-SeqHash
Package version 0.1.4
Package release alt1
Package architecture noarch
Package type rpm
Installed size 23.33 KB
Download size 23.33 KB
Official Mirror ftp.altlinux.org
Currently, there do have some modules that can operate the FASTA file such as Bio::SeqIO,
But it only provide some basic operation to obtain the information about sequence. In my daily work,
I still have to write some repetitive code. So this module is write to perform a deeper wrapper for operating FASTA file
Notice: this module is not suitable for the FASTA file that is extremble big.

Alternatives

Package Version Architecture Repository
perl-Bio-SeqHash - - -

Requires

Name Value
/usr/share/perl5 -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Bio/SeqHash.pm) = 0.001.004
perl-Bio-SeqHash = 0.1.4-alt1

Download

Type URL
Binary Package perl-Bio-SeqHash-0.1.4-alt1.noarch.rpm
Source Package perl-Bio-SeqHash-0.1.4-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-SeqHash rpm package:
    # sudo apt-get install perl-Bio-SeqHash

Files

Path
/usr/share/doc/perl-Bio-SeqHash-0.1.4/Changes
/usr/share/doc/perl-Bio-SeqHash-0.1.4/LICENSE
/usr/share/doc/perl-Bio-SeqHash-0.1.4/README.md
/usr/share/perl5/Bio/SeqHash.pm

See Also

Package Description
perl-Bio-SeqReader-0.1.3-alt2_9.noarch.rpm Class providing methods for representing header,
perl-Bio-Taxonomy-GlobalNames-0.07-alt1.noarch.rpm Perlish OO bindings to the L<Global Names Resolver|http://resolver.globalnames.org/> API
perl-Bio-Tools-Alignment-Overview-0.36-alt1.noarch.rpm just another represetation for biological sequence alignment
perl-Bio-Tools-CodonOptTable-1.05-alt1.noarch.rpm A more elaborative way to check the codons usage!
perl-Bio-Tools-Primer3Redux-0.09-alt1.noarch.rpm BioPerl-based tools for Primer3 (redone)
perl-Bio-Tools-ProteinogenicAA-0.021-alt1.noarch.rpm A object list of proteinogenic amino acids
perl-Bio-Tools-Run-Qcons-0.112881-alt1.noarch.rpm perl module Bio-Tools-Run-Qcons
perl-Bio-Trace-ABIF-1.06-alt1.noarch.rpm Perl extension for reading and parsing ABIF (Applied
perl-Bio-Translator-0.6.1-alt1.noarch.rpm Translate DNA sequences
perl-Bio-Translator-scripts-0.6.1-alt1.noarch.rpm Bio-Translator scripts
perl-Bio-Util-AA-0.1.6-alt1.noarch.rpm Basic Amino Acid utilities
perl-Bio-Util-DNA-0.2.1-alt1.noarch.rpm Basic DNA utilities
perl-Bio-VertRes-Config-1.133090-alt1.noarch.rpm Create config files for the vr-codebase pipelines
perl-Bio-VertRes-Config-scripts-1.133090-alt1.noarch.rpm Bio-VertRes-Config scripts
perl-Bio-ViennaNGS-AnnoC-0.06-alt1.noarch.rpm Perl extension for converting sequence annotation formats
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