perl-Bio-fastAPD - rapid calculation of average pairwise difference (APD) for multiple sequence alignments

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-Bio-fastAPD
Package version 1.08
Package release alt1
Package architecture noarch
Package type rpm
Installed size 53.32 KB
Download size 53.32 KB
Official Mirror
The Bio::fastAPD module provides computationally efficient methods for the calculation of
average pairwise difference (APD), a measure of nucleotide diversity, from multiple
sequence alignment (MSA) data. This module also provides rapid standard error estimation
of the APD using an efficient jackknife resampling method. Further description of the
methods implemented in this module, including mathematical justification, will be
available in an upcoming peer-reviewed journal article.


Package Version Architecture Repository
perl-Bio-fastAPD - - -


Name Value
/usr/share/perl5 -
rpmlib(PayloadIsLzma) -


Name Value
perl(Bio/ = 1.080
perl-Bio-fastAPD = 1.08-alt1


Type URL
Binary Package perl-Bio-fastAPD-1.08-alt1.noarch.rpm
Source Package perl-Bio-fastAPD-1.08-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    rpm [Sisyphus] noarch autoimports
    rpm [Sisyphus] noarch autoimports
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Bio-fastAPD rpm package:
    # sudo apt-get install perl-Bio-fastAPD



See Also

Package Description
perl-BioSAILs-0.02-alt1.noarch.rpm Standard(ized) Analysis Information Layers
perl-BioUtil-2015.0728-alt2.noarch.rpm Bioinformatics Utilities!
perl-BioX-FedDB-0.01-alt1.noarch.rpm Select/Resort a Federated BLAST Database with Catalyst and MySQL
perl-BioX-Seq-0.006004-alt1.noarch.rpm a (very) basic biological sequence object
perl-BioX-SeqUtils-Promoter-0.1.1-alt1.noarch.rpm Identification of core promoter elements and CpG islands in DNA sequeces via Consensus Sequences/Mo
perl-BioX-SeqUtils-RandomSequence-0.94-alt1.noarch.rpm perl module BioX-SeqUtils-RandomSequence
perl-BioX-Workflow-1.10-alt1.noarch.rpm A very opinionated template based workflow writer
perl-BioX-Workflow-Plugin-Drake-0.12-alt1.noarch.rpm A very opinionated template based bioinformatics workflow writer for Drake
perl-BioX-Workflow-Plugin-ENV-0.01-alt1.noarch.rpm Export SAMPLE to ENV
perl-BioX-Workflow-Plugin-FileDetails-0.11-alt1.noarch.rpm Get metadata for files in directories processed by L<BioX::Workflow>
perl-BioX-Workflow-Plugin-FileDetails-scripts-0.11-alt1.noarch.rpm BioX-Workflow-Plugin-FileDetails scripts
perl-BioX-Workflow-Plugin-FileExists-0.13-alt1.noarch.rpm a plugin to BioX::Workflow
perl-BioX-Workflow-scripts-1.10-alt1.noarch.rpm BioX-Workflow scripts
perl-BioX-Wrapper-1.5-alt1.noarch.rpm Base class for BioX::Wrappers
perl-BioX-Wrapper-Gemini-0.05-alt1.noarch.rpm A simple wrapper around the python Gemini library for annotating VCF files