perl-BioX-Workflow-Plugin-Drake-0.12-alt1.noarch.rpm


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Description

perl-BioX-Workflow-Plugin-Drake - A very opinionated template based bioinformatics workflow writer for Drake

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-BioX-Workflow-Plugin-Drake
Package version 0.12
Package release alt1
Package architecture noarch
Package type rpm
Installed size 39.24 KB
Download size 39.24 KB
Official Mirror ftp.altlinux.org
The main documentation for this module is at the BioX::Workflow manpage. This module extends Workflow in order to add functionality for outputing workflows in drake format.
biox-workflow.pl --workflow workflow.yml > workflow.drake
drake --workflow workflow.drake  #with other functionality such as --jobs for asynchronous output, etc.
List your plugins in your workflow.yml file
---
plugins:
- Drake
global:
- indir: /home/user/gemini
- outdir: /home/user/gemini/gemini-wrapper
- file_rule: (.vcf)$|(.vcf.gz)$
- infile:
- min: 1 ##IF USING MIN
More information about Drake can be found here https://github.com/Factual/drake.

Alternatives

Package Version Architecture Repository
perl-BioX-Workflow-Plugin-Drake - - -

Requires

Name Value
/usr/share/perl5 -
perl(Data/Dumper.pm) -
perl(Data/Pairs.pm) -
perl(Interpolation.pm) -
perl(Moose/Role.pm) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(BioX/Workflow/Plugin/Drake.pm) = 0.120
perl-BioX-Workflow-Plugin-Drake = 0.12-alt1

Download

Type URL
Binary Package perl-BioX-Workflow-Plugin-Drake-0.12-alt1.noarch.rpm
Source Package perl-BioX-Workflow-Plugin-Drake-0.12-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-BioX-Workflow-Plugin-Drake rpm package:
    # sudo apt-get install perl-BioX-Workflow-Plugin-Drake

Files

Path
/usr/share/doc/perl-BioX-Workflow-Plugin-Drake-0.12/Changes
/usr/share/doc/perl-BioX-Workflow-Plugin-Drake-0.12/LICENSE
/usr/share/doc/perl-BioX-Workflow-Plugin-Drake-0.12/README
/usr/share/doc/perl-BioX-Workflow-Plugin-Drake-0.12/example/drake.yml
/usr/share/doc/perl-BioX-Workflow-Plugin-Drake-0.12/example/run-workflow.sh
/usr/share/perl5/BioX/
/usr/share/perl5/BioX/Workflow/
/usr/share/perl5/BioX/Workflow/Plugin/Drake.pm

See Also

Package Description
perl-BioX-Workflow-Plugin-ENV-0.01-alt1.noarch.rpm Export SAMPLE to ENV
perl-BioX-Workflow-Plugin-FileDetails-0.11-alt1.noarch.rpm Get metadata for files in directories processed by L<BioX::Workflow>
perl-BioX-Workflow-Plugin-FileDetails-scripts-0.11-alt1.noarch.rpm BioX-Workflow-Plugin-FileDetails scripts
perl-BioX-Workflow-Plugin-FileExists-0.13-alt1.noarch.rpm a plugin to BioX::Workflow
perl-BioX-Workflow-scripts-1.10-alt1.noarch.rpm BioX-Workflow scripts
perl-BioX-Wrapper-1.5-alt1.noarch.rpm Base class for BioX::Wrappers
perl-BioX-Wrapper-Gemini-0.05-alt1.noarch.rpm A simple wrapper around the python Gemini library for annotating VCF files
perl-BioX-Wrapper-Gemini-scripts-0.05-alt1.noarch.rpm BioX-Wrapper-Gemini scripts
perl-Bioinfo-0.1.11-alt1.noarch.rpm my perl module and CLIs for Biology
perl-Bioinfo-scripts-0.1.11-alt1.noarch.rpm Bioinfo scripts
perl-Bisect-Perl-UsingGit-0.33-alt1_19.noarch.rpm Help you to bisect Perl
perl-Bison-0.05-alt1.noarch.rpm IPTables Script generator
perl-Bit-Compare-0.001-alt1.noarch.rpm Compare two "bit strings", returning differing bits
perl-Bit-FlipFlop-0.01-alt1.noarch.rpm perl module Bit-FlipFlop
perl-Bit-Manip-PP-1.07-alt1.noarch.rpm Pure Perl functions to simplify bit string manipulation
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