perl-Proch-N50-0.83-alt1.noarch.rpm


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Description

perl-Proch-N50 - Calculate N50 from a FASTA or FASTQ file without dependencies

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package filename perl-Proch-N50-0.83-alt1.noarch.rpm
Package name perl-Proch-N50
Package version 0.83
Package release alt1
Package architecture noarch
Package type rpm
Category Development/Perl
Homepage -
License -
Maintainer -
Download size 17.93 KB
Installed size 17.93 KB
use Proch::N50 qw(getStats getN50);
my $filepath = '/path/to/assembly.fasta';
print "N50 only:\t", getN50($filepath), "\n";
my $seq_stats = getStats($filepath);
print Data::Dumper->Dump( [ $seq_stats ], [ qw(*FASTA_stats) ] );
my $seq_stats_with_JSON = getStats($filepath, 'JSON');
print $seq_stats_with_JSON->{json}, "\n";

Alternatives

Package Version Architecture Repository
perl-Proch-N50 - - -

Requires

Name Value
/usr/share/perl5 -
perl(FASTX/Reader.pm) >= 0.320
perl(File/Basename.pm) -
perl(JSON/PP.pm) >= 2.270
perl-base >= 1:5.14.0
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(Proch/N50.pm) = 0.830
perl-Proch-N50 = 2:0.83-alt1

Download

Type URL
Mirror ftp.altlinux.org
Binary Package perl-Proch-N50-0.83-alt1.noarch.rpm
Source Package perl-Proch-N50-0.83-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-Proch-N50 rpm package:
    # sudo apt-get install perl-Proch-N50

Files

Path
/usr/share/doc/perl-Proch-N50-0.83/CONTRIBUTING.md
/usr/share/doc/perl-Proch-N50-0.83/Changes
/usr/share/doc/perl-Proch-N50-0.83/LICENSE
/usr/share/doc/perl-Proch-N50-0.83/README
/usr/share/doc/perl-Proch-N50-0.83/README.md
/usr/share/doc/perl-Proch-N50-0.83/README.template
/usr/share/perl5/Proch/N50.pm

See Also

Package Description
perl-Proch-N50-scripts-0.83-alt1.noarch.rpm Proch-N50 scripts
perl-Proclet-0.35-alt1.noarch.rpm minimalistic Supervisor
perl-Proclet-scripts-0.35-alt1.noarch.rpm Proclet scripts
perl-Progress-Any-0.214-alt1.noarch.rpm Record progress to any output
perl-Progress-Any-Output-Callback-0.04-alt1.noarch.rpm Propagate progress update to a callback function
perl-Progress-Any-Output-LogAny-0.04-alt1.noarch.rpm Output progress to Log::Any
perl-Progress-Any-Output-TermMessage-0.041-alt1.noarch.rpm Output progress to terminal as simple message
perl-Progress-Any-Output-TermProgressBarColor-0.246-alt1.noarch.rpm Output progress to terminal as color bar
perl-Progress-Any-Output-TermSpin-0.02-alt1.noarch.rpm Output progress to terminal as spinning cursor
perl-Progress-Awesome-0.1-alt1.noarch.rpm **Progress::Awesome** - an awesome progress bar that just works
perl-Progress-PV-0.02-alt1.noarch.rpm lib/Progress/PV.pm
perl-ProgressBar-Stack-1.01-alt1.noarch.rpm Progress bar implementation with stack support and useful loop wrappers
perl-ProgressMonitor-0.33-alt1.noarch.rpm a flexible and configurable framework for providing feedback on how a long-running task is proceedi
perl-Project-Easy-0.30-alt1.noarch.rpm project deployment made easy
perl-Project-Easy-scripts-0.30-alt1.noarch.rpm Project-Easy scripts
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