perl-TIGR-0.03-alt1.noarch.rpm


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Description

perl-TIGR - Legacy classes/scripts from TIGR for HMM and FASTA parsing

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package name perl-TIGR
Package version 0.03
Package release alt1
Package architecture noarch
Package type rpm
Installed size 176.95 KB
Download size 176.95 KB
Official Mirror ftp.altlinux.org
Ages ago developers at The Institute for Genomic Research (RIP) produced code to process
raw alignment files from the HMMer suite.  Many of these functions were embedded within a
variety of scripts which do things like format conversion.  Installing this package also
adds the utility script, 'convert_hmmscan_to_htab.pl'

Alternatives

Package Version Architecture Repository
perl-TIGR - - -

Requires

Name Value
/usr/share/perl5 -
perl(Cwd.pm) -
perl(Data/Dumper.pm) -
perl(File/Basename.pm) -
perl(Getopt/Long.pm) -
perl(IO/File.pm) -
perl(IO/Handle.pm) -
perl(POSIX.pm) -
perl(Sys/Hostname.pm) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
perl(TIGR/FASTA/Grammar.pm) = 1.200
perl(TIGR/FASTA/Iterator.pm) = 1.110
perl(TIGR/FASTA/Reader.pm) = 1.210
perl(TIGR/FASTA/Record.pm) = 1.200
perl(TIGR/FASTA/Writer.pm) = 1.0
perl(TIGR/Foundation.pm) = 1.410
perl(TIGR/HmmTools.pm) = 0.030
perl-TIGR = 0.03-alt1

Download

Type URL
Binary Package perl-TIGR-0.03-alt1.noarch.rpm
Source Package perl-TIGR-0.03-alt1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install perl-TIGR rpm package:
    # sudo apt-get install perl-TIGR

Files

Path
/usr/share/doc/perl-TIGR-0.03/Changes
/usr/share/doc/perl-TIGR-0.03/README
/usr/share/doc/perl-TIGR-0.03/ignore.txt
/usr/share/perl5/TIGR/Foundation.pm
/usr/share/perl5/TIGR/HmmTools.pm
/usr/share/perl5/TIGR/FASTA/Grammar.pm
/usr/share/perl5/TIGR/FASTA/Iterator.pm
/usr/share/perl5/TIGR/FASTA/Reader.pm
/usr/share/perl5/TIGR/FASTA/Record.pm
/usr/share/perl5/TIGR/FASTA/Writer.pm

See Also

Package Description
perl-TIGR-scripts-0.03-alt1.noarch.rpm TIGR scripts
perl-TL1-Toolkit-0.02-alt1.noarch.rpm Utility functions for interacting with TL1 equipment
perl-TL1ng-0.08-alt1.noarch.rpm A simple, flexible, OO way to work with TL1
perl-TM-Ontology-KIF-0.02-alt1.noarch.rpm perl module TM-Ontology-KIF
perl-TM-Ontology-KIF-scripts-0.02-alt1.noarch.rpm TM-Ontology-KIF scripts
perl-TMDB-1.2.1-alt1.noarch.rpm Perl wrapper for The MovieDB API
perl-TOBYINK-Pod-HTML-0.005-alt1.noarch.rpm convert Pod to HTML like TOBYINK
perl-TOBYINK-Pod-HTML-scripts-0.005-alt1.noarch.rpm TOBYINK-Pod-HTML scripts
perl-TOML-Dumper-0.01-alt1.noarch.rpm It's new $module
perl-TOML-Examples-0.001-alt1.noarch.rpm Example TOML configuration files
perl-TRD-DebugLog-0.0.9-alt1.noarch.rpm debug log
perl-TRD-Uranai-0.0.2-alt1.noarch.rpm Today's Uranai Count down
perl-TRD-Velocity-0.0.8-alt1.noarch.rpm Template engine
perl-TRD-Watch-DB-0.0.5-alt1.noarch.rpm perl module TRD-Watch-DB
perl-TRD-Watch-Ping-0.0.4-alt1.noarch.rpm ARRAY(0x3c45af20)
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