vhybridize-0.5.9-alt1_22.noarch.rpm


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Description

vhybridize - Virtual Hybridization command line tools

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports noarch
Package filename vhybridize-0.5.9-alt1_22.noarch.rpm
Package name vhybridize
Package version 0.5.9
Package release alt1_22
Package architecture noarch
Package type rpm
Category Engineering
Homepage -
License -
Maintainer -
Download size 297.78 KB
Installed size 297.78 KB
Virtual Hybridization uses sets of short probes to generate datasets
for comparative genomics: given a DNA sequence and a set of probes,
the typical output will give a sequence of oriented probe hits along
the DNA sequence. Other tools are supplied to allow simple manipulations
such as format conversion and extraction of permutations.

Alternatives

Package Version Architecture Repository
vhybridize - - -

Requires

Name Value
/usr/bin/python -
/usr/lib/python2.7/site-packages -
python-modules -
python2.7(pkg_resources) -
rpmlib(PayloadIsLzma) -

Provides

Name Value
python2.7(vhybridize) -
python2.7(vhybridize.config) -
python2.7(vhybridize.locate) -
python2.7(vhybridize.scripts) -
python2.7(vhybridize.scripts.filter) -
python2.7(vhybridize.scripts.merge) -
python2.7(vhybridize.scripts.split_multi_fasta) -
python2.7(vhybridize.scripts.to_permutation) -
python2.7(vhybridize.scripts.to_vhx) -
python2.7(vhybridize.utils) -
vhybridize = 0.5.9-alt1_22

Download

Type URL
Mirror ftp.altlinux.org
Binary Package vhybridize-0.5.9-alt1_22.noarch.rpm
Source Package vhybridize-0.5.9-alt1_22.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install vhybridize rpm package:
    # sudo apt-get install vhybridize

Files

Path
/usr/bin/vhy-filter
/usr/bin/vhy-merge
/usr/bin/vhy-split-multi-fasta
/usr/bin/vhy-to-permutation
/usr/bin/vhy-to-vhx
/usr/bin/vhybridize
/usr/lib/python2.7/site-packages/vhybridize/__init__.py
/usr/lib/python2.7/site-packages/vhybridize/__init__.pyc
/usr/lib/python2.7/site-packages/vhybridize/__init__.pyo
/usr/lib/python2.7/site-packages/vhybridize/config.py
/usr/lib/python2.7/site-packages/vhybridize/config.pyc
/usr/lib/python2.7/site-packages/vhybridize/config.pyo
/usr/lib/python2.7/site-packages/vhybridize/locate.py
/usr/lib/python2.7/site-packages/vhybridize/locate.pyc
/usr/lib/python2.7/site-packages/vhybridize/locate.pyo
/usr/lib/python2.7/site-packages/vhybridize/utils.py
/usr/lib/python2.7/site-packages/vhybridize/utils.pyc
/usr/lib/python2.7/site-packages/vhybridize/utils.pyo
/usr/lib/python2.7/site-packages/vhybridize-0.5.9-py2.7.egg-info/PKG-INFO
/usr/lib/python2.7/site-packages/vhybridize-0.5.9-py2.7.egg-info/SOURCES.txt
/usr/lib/python2.7/site-packages/vhybridize-0.5.9-py2.7.egg-info/dependency_links.txt
/usr/lib/python2.7/site-packages/vhybridize-0.5.9-py2.7.egg-info/entry_points.txt
/usr/lib/python2.7/site-packages/vhybridize-0.5.9-py2.7.egg-info/top_level.txt
/usr/lib/python2.7/site-packages/vhybridize/scripts/__init__.py
/usr/lib/python2.7/site-packages/vhybridize/scripts/__init__.pyc
/usr/lib/python2.7/site-packages/vhybridize/scripts/__init__.pyo
/usr/lib/python2.7/site-packages/vhybridize/scripts/filter.py
/usr/lib/python2.7/site-packages/vhybridize/scripts/filter.pyc
/usr/lib/python2.7/site-packages/vhybridize/scripts/filter.pyo
/usr/lib/python2.7/site-packages/vhybridize/scripts/merge.py
/usr/lib/python2.7/site-packages/vhybridize/scripts/merge.pyc
/usr/lib/python2.7/site-packages/vhybridize/scripts/merge.pyo
/usr/lib/python2.7/site-packages/vhybridize/scripts/split_multi_fasta.py
/usr/lib/python2.7/site-packages/vhybridize/scripts/split_multi_fasta.pyc
/usr/lib/python2.7/site-packages/vhybridize/scripts/split_multi_fasta.pyo
/usr/lib/python2.7/site-packages/vhybridize/scripts/to_permutation.py
/usr/lib/python2.7/site-packages/vhybridize/scripts/to_permutation.pyc
/usr/lib/python2.7/site-packages/vhybridize/scripts/to_permutation.pyo
/usr/lib/python2.7/site-packages/vhybridize/scripts/to_vhx.py
/usr/lib/python2.7/site-packages/vhybridize/scripts/to_vhx.pyc
/usr/lib/python2.7/site-packages/vhybridize/scripts/to_vhx.pyo
/usr/share/doc/vhybridize-0.5.9/AUTHORS.txt
/usr/share/doc/vhybridize-0.5.9/COPYING.txt
/usr/share/doc/vhybridize-0.5.9/README.txt
/usr/share/doc/vhybridize-0.5.9/TODO.txt
/usr/share/doc/vhybridize-0.5.9/docs/formats.txt
/usr/share/doc/vhybridize-0.5.9/docs/manual.txt
/usr/share/doc/vhybridize-0.5.9/examples/NC_000932.fas
/usr/share/doc/vhybridize-0.5.9/examples/chloroplasts-probes-beta7.fas

See Also

Package Description
videoconvert-0.2-alt2_8.noarch.rpm A python script for encoding vdr recordings
viewvc-1.1.26-alt1_8.noarch.rpm Browser interface for CVS and SVN version control repositories
viewvc-httpd-fcgi-1.1.26-alt1_8.noarch.rpm ViewVC configuration for Apache/mod_fcgid
viewvc-httpd-wsgi-1.1.26-alt1_8.noarch.rpm ViewVC configuration for Apache/mod_wsgi
vim-rnv-1.7.11-alt1_18.noarch.rpm Vim plugin for validating XML files against Relax NG Compact schemas using RNV
vim-vimoutliner-0.4.0-alt1_11.noarch.rpm Script for building an outline editor on top of Vim
virtualplanet-data-base-2.5-alt1_7.164svn.noarch.rpm Base data for Virtual Planets Atlas
virtualplanet-data-historical-2.5-alt1_7.164svn.noarch.rpm Historical textures for Virtual Planets Atlas
virtualplanet-doc-2.5-alt1_7.164svn.noarch.rpm Documentation files for Virtual Planets Atlas
vizant-0.1.0-alt1_7.noarch.rpm Ant task to visualize buildfile
voms-doc-2.1.0-alt1_0.14.rc0.noarch.rpm Virtual Organization Membership Service Documentation
vorbisspi-1.0.3-alt1_9.noarch.rpm Ogg Vorbis sound engine
vorbisspi-javadoc-1.0.3-alt1_9.noarch.rpm Javadoc for vorbisspi
vtkdata-6.1.0-alt1_2.noarch.rpm Example data file for VTK
warmux-data-11.04.1-alt1_24.noarch.rpm Data files for warmux
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