BEDTools-2.27.1-alt1_1.x86_64.rpm


Description

BEDTools - A flexible suite of utilities for comparing genomic features

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports x86_64 Official
Package filename BEDTools-2.27.1-alt1_1.x86_64.rpm
Package name BEDTools
Package version 2.27.1
Package release alt1_1
Package architecture x86_64
Package type rpm
Homepage -
License -
Maintainer -
Download size 7.50 MB
Installed size 7.50 MB
Category
The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.

Alternatives

Package Version Repository
BEDTools All All

Requires

Name Value
/lib64/ld-linux-x86-64.so.2 -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.15)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libc.so.6(GLIBC_2.8)(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libm.so.6(GLIBC_2.23)(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.8)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.15)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.20)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
libz.so.1()(64bit) -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -

Provides

Name Value
BEDTools = 2.27.1-alt1_1

Download

Type URL
Mirror ftp.altlinux.org
Binary Package BEDTools-2.27.1-alt1_1.x86_64.rpm
Source Package BEDTools-2.27.1-alt1_1.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus x86_64 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install BEDTools rpm package:
    # sudo apt-get install BEDTools

Files

Path
/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bamToFastq
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/bedpeToBam
/usr/bin/bedtools
/usr/bin/closestBed
/usr/bin/clusterBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/expandCols
/usr/bin/fastaFromBed
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/getOverlap
/usr/bin/groupBy
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/mapBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/multiBamCov
/usr/bin/multiIntersectBed
/usr/bin/nucBed
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/randomBed
/usr/bin/shiftBed
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/tagBam
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/bin/windowMaker
/usr/share/BEDTools/
/usr/share/BEDTools/data/aluY.chr1.bed.gz
/usr/share/BEDTools/data/gerp.chr1.bed.gz
/usr/share/BEDTools/data/knownGene.hg18.chr21.bed
/usr/share/BEDTools/data/knownGene.hg18.chr21.short.bed
/usr/share/BEDTools/data/refseq.chr1.exons.bed.gz
/usr/share/BEDTools/data/simpleRepeats.chr1.bed.gz
/usr/share/BEDTools/genomes/human.hg18.genome
/usr/share/BEDTools/genomes/human.hg19.genome
/usr/share/BEDTools/genomes/human.hg38.genome
/usr/share/BEDTools/genomes/mouse.mm10.genome
/usr/share/BEDTools/genomes/mouse.mm8.genome
/usr/share/BEDTools/genomes/mouse.mm9.genome
/usr/share/doc/BEDTools-2.27.1/LICENSE
/usr/share/doc/BEDTools-2.27.1/README.md
/usr/share/doc/BEDTools-2.27.1/RELEASE_HISTORY
/usr/share/doc/BEDTools-2.27.1/html/.buildinfo
/usr/share/doc/BEDTools-2.27.1/html/genindex.html
/usr/share/doc/BEDTools-2.27.1/html/index.html
/usr/share/doc/BEDTools-2.27.1/html/objects.inv
/usr/share/doc/BEDTools-2.27.1/html/search.html
/usr/share/doc/BEDTools-2.27.1/html/searchindex.js
/usr/share/doc/BEDTools-2.27.1/html/_images/barski_binding_site.png
/usr/share/doc/BEDTools-2.27.1/html/_images/bedtoolsMenu.png
/usr/share/doc/BEDTools-2.27.1/html/_images/closest-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/cluster-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/complement-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/flank-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/galaxy-bedtools.png
/usr/share/doc/BEDTools-2.27.1/html/_images/genomecov-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/getfasta-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/github-zip-button.png
/usr/share/doc/BEDTools-2.27.1/html/_images/intersect-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/jaccard-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/map-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/map-speed-comparo.png
/usr/share/doc/BEDTools-2.27.1/html/_images/maskfasta-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/memory-comparo.png
/usr/share/doc/BEDTools-2.27.1/html/_images/merge-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/random-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/reldist-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/reldist-plot.png
/usr/share/doc/BEDTools-2.27.1/html/_images/res-genes.png
/usr/share/doc/BEDTools-2.27.1/html/_images/shuffle-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/slop-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/speed-comparo.png
/usr/share/doc/BEDTools-2.27.1/html/_images/subtract-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_images/window-glyph.png
/usr/share/doc/BEDTools-2.27.1/html/_sources/index.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/advanced-usage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/bedtools-suite.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/example-usage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/faq.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/general-usage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/history.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/installation.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/overview.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/quick-start.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/related-tools.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tips-and-tricks.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/annotate.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bamtobed.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bamtofastq.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bed12tobed6.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bedpetobam.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/bedtobam.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/closest.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/cluster.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/complement.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/coverage.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/expand.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/fisher.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/flank.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/genomecov.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/getfasta.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/groupby.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/igv.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/intersect.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/jaccard.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/links.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/makewindows.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/map.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/maskfasta.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/merge.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/multicov.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/multiinter.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/nuc.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/overlap.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/pairtobed.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/pairtopair.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/random.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/reldist.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/shift.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/shuffle.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/slop.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/sort.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/subtract.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/tag.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/unionbedg.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_sources/content/tools/window.rst.txt
/usr/share/doc/BEDTools-2.27.1/html/_static/ajax-loader.gif
/usr/share/doc/BEDTools-2.27.1/html/_static/basic.css
/usr/share/doc/BEDTools-2.27.1/html/_static/bedtools.png
/usr/share/doc/BEDTools-2.27.1/html/_static/bedtools.swiss.png
/usr/share/doc/BEDTools-2.27.1/html/_static/classic.css
/usr/share/doc/BEDTools-2.27.1/html/_static/comment-bright.png
/usr/share/doc/BEDTools-2.27.1/html/_static/comment-close.png
/usr/share/doc/BEDTools-2.27.1/html/_static/comment.png
/usr/share/doc/BEDTools-2.27.1/html/_static/default.css
/usr/share/doc/BEDTools-2.27.1/html/_static/doctools.js
/usr/share/doc/BEDTools-2.27.1/html/_static/down-pressed.png
/usr/share/doc/BEDTools-2.27.1/html/_static/down.png
/usr/share/doc/BEDTools-2.27.1/html/_static/file.png
/usr/share/doc/BEDTools-2.27.1/html/_static/jquery-3.1.0.js
/usr/share/doc/BEDTools-2.27.1/html/_static/jquery.js
/usr/share/doc/BEDTools-2.27.1/html/_static/labibi.css
/usr/share/doc/BEDTools-2.27.1/html/_static/labibi.js
/usr/share/doc/BEDTools-2.27.1/html/_static/minus.png
/usr/share/doc/BEDTools-2.27.1/html/_static/plus.png
/usr/share/doc/BEDTools-2.27.1/html/_static/pygments.css
/usr/share/doc/BEDTools-2.27.1/html/_static/rtd.css
/usr/share/doc/BEDTools-2.27.1/html/_static/searchtools.js
/usr/share/doc/BEDTools-2.27.1/html/_static/sidebar.js
/usr/share/doc/BEDTools-2.27.1/html/_static/underscore-1.3.1.js
/usr/share/doc/BEDTools-2.27.1/html/_static/underscore.js
/usr/share/doc/BEDTools-2.27.1/html/_static/up-pressed.png
/usr/share/doc/BEDTools-2.27.1/html/_static/up.png
/usr/share/doc/BEDTools-2.27.1/html/_static/websupport.js
/usr/share/doc/BEDTools-2.27.1/html/content/advanced-usage.html
/usr/share/doc/BEDTools-2.27.1/html/content/bedtools-suite.html
/usr/share/doc/BEDTools-2.27.1/html/content/example-usage.html
/usr/share/doc/BEDTools-2.27.1/html/content/faq.html
/usr/share/doc/BEDTools-2.27.1/html/content/general-usage.html
/usr/share/doc/BEDTools-2.27.1/html/content/history.html
/usr/share/doc/BEDTools-2.27.1/html/content/installation.html
/usr/share/doc/BEDTools-2.27.1/html/content/overview.html
/usr/share/doc/BEDTools-2.27.1/html/content/quick-start.html
/usr/share/doc/BEDTools-2.27.1/html/content/related-tools.html
/usr/share/doc/BEDTools-2.27.1/html/content/tips-and-tricks.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/annotate.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bamtobed.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bamtofastq.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bed12tobed6.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bedpetobam.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/bedtobam.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/closest.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/cluster.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/complement.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/coverage.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/expand.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/fisher.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/flank.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/genomecov.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/getfasta.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/groupby.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/igv.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/intersect.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/jaccard.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/links.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/makewindows.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/map.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/maskfasta.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/merge.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/multicov.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/multiinter.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/nuc.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/overlap.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/pairtobed.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/pairtopair.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/random.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/reldist.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/shift.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/shuffle.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/slop.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/sort.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/subtract.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/tag.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/unionbedg.html
/usr/share/doc/BEDTools-2.27.1/html/content/tools/window.html

See Also

Package Description
BibTool-2.67-alt1_9.x86_64.rpm A Tool for manipulating BibTeX data bases
BillardGL-1.75-alt1_3.x86_64.rpm 3D billard simulation using OpenGL
BitchX-1.2.1-alt1_20.x86_64.rpm IrcII chat client
CGSI-gSOAP-1.3.11-alt1_5.x86_64.rpm GSI plugin for gSOAP
CGSI-gSOAP-devel-1.3.11-alt1_5.x86_64.rpm GSI plugin for gSOAP - development files
CTL-1.4.1-alt2_29.x86_64.rpm The Color Transformation Language
CTL-devel-1.4.1-alt2_29.x86_64.rpm Development files for CTL
Canna-3.7p3-alt1_56.x86_64.rpm A Japanese character set input system
Canna-devel-3.7p3-alt1_56.x86_64.rpm Header file and library for developing programs which use Canna
Canna-libs-3.7p3-alt1_56.x86_64.rpm The runtime library for Canna
Cg-3.1.0013-alt1_12.x86_64.rpm NVIDIA Cg Toolkit
Cg-devel-3.1.0013-alt1_12.x86_64.rpm development files for Gg
DivFix++-0.34-alt1_29.x86_64.rpm Repair broken AVI file streams by rebuilding index part of file
E-2.1-alt1_2.x86_64.rpm Equational Theorem Prover
EmptyEpsilon-2019.05.21-alt1_1.x86_64.rpm Spaceship bridge simulator game