bowtie-1.0.1-alt1_10.x86_64.rpm


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Description

bowtie - An ultrafast, memory-efficient short read aligner

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports x86_64
Package name bowtie
Package version 1.0.1
Package release alt1_10
Package architecture x86_64
Package type rpm
Installed size 12.91 MB
Download size 12.91 MB
Official Mirror ftp.altlinux.org
Bowtie, an ultrafast, memory-efficient short read aligner for short
DNA sequences (reads) from next-gen sequencers. Please cite: Langmead
B, et al. Ultrafast and memory-efficient alignment of short DNA
sequences to the human genome. Genome Biol 10:R25.

Alternatives

Package Version Architecture Repository
bowtie-1.0.1-alt1_10.i586.rpm 1.0.1 i586 Autoimports
bowtie - - -

Requires

Name Value
/lib64/ld-linux-x86-64.so.2 -
/usr/bin/perl -
coreutils -
curl -
gzip -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libm.so.6(GLIBC_2.27)(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.8)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.20)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
make -
perl(FindBin.pm) -
perl(Getopt/Long.pm) -
perl(List/Util.pm) -
perl-base -
rpmlib(PayloadIsLzma) -
rtld(GNU_HASH) -
sh -
wget -
which -

Provides

Name Value
bowtie = 1.0.1-alt1_10

Download

Type URL
Binary Package bowtie-1.0.1-alt1_10.x86_64.rpm
Source Package bowtie-1.0.1-alt1_10.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus x86_64 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install bowtie rpm package:
    # sudo apt-get install bowtie

Files

Path
/usr/bin/bowtie
/usr/bin/bowtie-build
/usr/bin/bowtie-inspect
/usr/share/bowtie/
/usr/share/bowtie/genomes/NC_008253.fna
/usr/share/bowtie/indexes/e_coli.1.ebwt
/usr/share/bowtie/indexes/e_coli.2.ebwt
/usr/share/bowtie/indexes/e_coli.3.ebwt
/usr/share/bowtie/indexes/e_coli.4.ebwt
/usr/share/bowtie/indexes/e_coli.README
/usr/share/bowtie/indexes/e_coli.rev.1.ebwt
/usr/share/bowtie/indexes/e_coli.rev.2.ebwt
/usr/share/bowtie/reads/e_coli_1000.fa
/usr/share/bowtie/reads/e_coli_1000.fq
/usr/share/bowtie/reads/e_coli_1000.raw
/usr/share/bowtie/reads/e_coli_10000snp.fa
/usr/share/bowtie/reads/e_coli_10000snp.fq
/usr/share/bowtie/reads/e_coli_1000_1.fa
/usr/share/bowtie/reads/e_coli_1000_1.fq
/usr/share/bowtie/reads/e_coli_1000_2.fa
/usr/share/bowtie/reads/e_coli_1000_2.fq
/usr/share/bowtie/scripts/best_verify.pl
/usr/share/bowtie/scripts/bs_mapability.pl
/usr/share/bowtie/scripts/build_test.sh
/usr/share/bowtie/scripts/colorize_fasta.pl
/usr/share/bowtie/scripts/colorize_fastq.pl
/usr/share/bowtie/scripts/convert_quals.pl
/usr/share/bowtie/scripts/fastq_to_tabbed.pl
/usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
/usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
/usr/share/bowtie/scripts/gen_occ_lookup.pl
/usr/share/bowtie/scripts/gen_solqual_lookup.pl
/usr/share/bowtie/scripts/infer_fraglen.pl
/usr/share/bowtie/scripts/make_a_thaliana_tair.sh
/usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
/usr/share/bowtie/scripts/make_c_elegans.sh
/usr/share/bowtie/scripts/make_canFam2.sh
/usr/share/bowtie/scripts/make_d_melanogaster.sh
/usr/share/bowtie/scripts/make_e_coli.sh
/usr/share/bowtie/scripts/make_galGal3.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
/usr/share/bowtie/scripts/make_hg18.sh
/usr/share/bowtie/scripts/make_hg19.sh
/usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
/usr/share/bowtie/scripts/make_mm8.sh
/usr/share/bowtie/scripts/make_mm9.sh
/usr/share/bowtie/scripts/make_rn4.sh
/usr/share/bowtie/scripts/make_s_cerevisiae.sh
/usr/share/bowtie/scripts/mapability.pl
/usr/share/bowtie/scripts/pe_verify.pl
/usr/share/bowtie/scripts/random_bowtie_tests.pl
/usr/share/bowtie/scripts/random_bowtie_tests.sh
/usr/share/bowtie/scripts/random_bowtie_tests_p.sh
/usr/share/bowtie/scripts/reconcile_alignments.pl
/usr/share/bowtie/scripts/reconcile_alignments_pe.pl
/usr/share/doc/bowtie-1.0.1/AUTHORS
/usr/share/doc/bowtie-1.0.1/GPL.txt
/usr/share/doc/bowtie-1.0.1/LGPL.txt
/usr/share/doc/bowtie-1.0.1/MANUAL
/usr/share/doc/bowtie-1.0.1/NEWS
/usr/share/doc/bowtie-1.0.1/TUTORIAL
/usr/share/doc/bowtie-1.0.1/VERSION
/usr/share/doc/bowtie-1.0.1/manual.html
/usr/share/doc/bowtie-1.0.1/style.css

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bwbasic-2.50-alt1_9.x86_64.rpm A Basic interpreter
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