bwa-0.7.15-alt1_5.x86_64.rpm


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Description

bwa - Burrows-Wheeler Alignment tool

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports x86_64
Package name bwa
Package version 0.7.15
Package release alt1_5
Package architecture x86_64
Package type rpm
Installed size 484.04 KB
Download size 484.04 KB
Official Mirror ftp.altlinux.org
BWA is a program for aligning sequencing reads against a large
reference genome (e.g. human genome). It has two major components, one
for read shorter than 150bp and the other for longer reads.

Alternatives

Package Version Architecture Repository
bwa - - -

Requires

Name Value
/bin/bash -
/lib64/ld-linux-x86-64.so.2 -
/usr/bin/env -
coreutils -
findutils -
gawk -
grep -
gzip -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.15)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libc.so.6(GLIBC_2.7)(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libpthread.so.0(GLIBC_2.3.2)(64bit) -
librt.so.1()(64bit) -
librt.so.1(GLIBC_2.2.5)(64bit) -
libz.so.1()(64bit) -
make -
perl(Getopt/Std.pm) -
perl-base -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -
sed -
sh -
wget -

Provides

Name Value
bwa = 0.7.15-alt1_5

Download

Type URL
Binary Package bwa-0.7.15-alt1_5.x86_64.rpm
Source Package bwa-0.7.15-alt1_5.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus x86_64 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install bwa rpm package:
    # sudo apt-get install bwa

Files

Path
/usr/bin/README.md
/usr/bin/bwa
/usr/bin/bwa-postalt.js
/usr/bin/qualfa2fq.pl
/usr/bin/run-HLA
/usr/bin/run-bwamem
/usr/bin/run-gen-ref
/usr/bin/typeHLA-selctg.js
/usr/bin/typeHLA.js
/usr/bin/typeHLA.sh
/usr/bin/xa2multi.pl
/usr/share/doc/bwa-0.7.15/COPYING
/usr/share/doc/bwa-0.7.15/NEWS.md
/usr/share/doc/bwa-0.7.15/README-alt.md
/usr/share/doc/bwa-0.7.15/README.md
/usr/share/man/man1/bwa.1.xz

See Also

Package Description
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bwbasic-2.50-alt1_9.x86_64.rpm A Basic interpreter
bwm-ng-0.6-alt1.qa1_9.x86_64.rpm Console-based live network and disk io bandwidth monitor
byacc-1.9.20120115-alt1_2.x86_64.rpm Berkeley Yacc, a parser generator
byzanz-0.3-alt1_0.git201402246.x86_64.rpm A desktop recorder
c-graph-2.0-alt1_13.x86_64.rpm A tool for visualizing convolution
cagibi-0.2.0-alt1_15.x86_64.rpm SSDP (UPnP discovery) cache/proxy daemon
calc-2.12.6.7-alt1_3.x86_64.rpm Arbitrary precision arithmetic system and calculator
calc-devel-2.12.6.7-alt1_3.x86_64.rpm Development files for the calc arithmetic system
calc-libs-2.12.6.7-alt1_3.x86_64.rpm Libraries for the calc arithmetic system
calc-stdrc-2.12.6.7-alt1_3.x86_64.rpm Standard resource files the calc arithmetic system
calendar-1.28-alt1_8.20140613cvs.x86_64.rpm Reminder utility
callgit-2.0-alt1_20.x86_64.rpm A tool for Ham Radio Operators to look up call-signs on the web
caml2html-1.4.4-alt2_1.x86_64.rpm Highlight OCaml code by adding some color
camorama-0.19-alt1_14.x86_64.rpm Gnome webcam viewer
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