Description
bwa - Burrows-Wheeler Alignment tool
| Property | Value |
|---|---|
| Distribution | ALT Linux Sisyphus |
| Repository | Autoimports x86_64 |
| Package name | bwa |
| Package version | 0.7.15 |
| Package release | alt1_7 |
| Package architecture | x86_64 |
| Package type | rpm |
| Installed size | 484.04 KB |
| Download size | 484.04 KB |
| Official Mirror | ftp.altlinux.org |
BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
Alternatives
| Package | Version | Architecture | Repository |
|---|---|---|---|
| bwa | - | - | - |
Requires
| Name | Value |
|---|---|
| /bin/bash | - |
| /lib64/ld-linux-x86-64.so.2 | - |
| /usr/bin/env | - |
| coreutils | - |
| findutils | - |
| gawk | - |
| grep | - |
| gzip | - |
| libc.so.6(GLIBC_2.14)(64bit) | - |
| libc.so.6(GLIBC_2.15)(64bit) | - |
| libc.so.6(GLIBC_2.2.5)(64bit) | - |
| libc.so.6(GLIBC_2.3)(64bit) | - |
| libc.so.6(GLIBC_2.3.4)(64bit) | - |
| libc.so.6(GLIBC_2.4)(64bit) | - |
| libc.so.6(GLIBC_2.7)(64bit) | - |
| libm.so.6(GLIBC_2.2.5)(64bit) | - |
| libpthread.so.0(GLIBC_2.2.5)(64bit) | - |
| libpthread.so.0(GLIBC_2.3.2)(64bit) | - |
| librt.so.1()(64bit) | - |
| librt.so.1(GLIBC_2.2.5)(64bit) | - |
| libz.so.1()(64bit) | - |
| make | - |
| perl(Getopt/Std.pm) | - |
| perl-base | - |
| rpmlib(PayloadIsLzma) | - |
| rpmlib(SetVersions) | - |
| rtld(GNU_HASH) | - |
| sed | - |
| sh | - |
| wget | - |
Provides
| Name | Value |
|---|---|
| bwa | = 0.7.15-alt1_7 |
Download
| Type | URL |
|---|---|
| Binary Package | bwa-0.7.15-alt1_7.x86_64.rpm |
| Source Package | bwa-0.7.15-alt1_7.src.rpm |
Install Howto
- Add the following line to /etc/apt/sources.list:
rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus x86_64 autoimports rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports - Update the package index:
# sudo apt-get update - Install bwa rpm package:
# sudo apt-get install bwa
Files
| Path |
|---|
| /usr/bin/README.md |
| /usr/bin/bwa |
| /usr/bin/bwa-postalt.js |
| /usr/bin/qualfa2fq.pl |
| /usr/bin/run-HLA |
| /usr/bin/run-bwamem |
| /usr/bin/run-gen-ref |
| /usr/bin/typeHLA-selctg.js |
| /usr/bin/typeHLA.js |
| /usr/bin/typeHLA.sh |
| /usr/bin/xa2multi.pl |
| /usr/share/doc/bwa-0.7.15/COPYING |
| /usr/share/doc/bwa-0.7.15/NEWS.md |
| /usr/share/doc/bwa-0.7.15/README-alt.md |
| /usr/share/doc/bwa-0.7.15/README.md |
| /usr/share/man/man1/bwa.1.xz |
See Also
| Package | Description |
|---|---|
| bwbar-1.2.3-alt2_24.x86_64.rpm | Generate a readout of the current bandwidth use |
| bwbasic-2.50-alt1_9.x86_64.rpm | A Basic interpreter |
| bwm-ng-0.6-alt1.qa1_9.x86_64.rpm | Console-based live network and disk io bandwidth monitor |
| byacc-1.9.20120115-alt1_2.x86_64.rpm | Berkeley Yacc, a parser generator |
| byzanz-0.3-alt1_0.git201402246.x86_64.rpm | A desktop recorder |
| c-graph-2.0-alt1_14.x86_64.rpm | A tool for visualizing convolution |
| cagibi-0.2.0-alt1_16.x86_64.rpm | SSDP (UPnP discovery) cache/proxy daemon |
| calc-2.12.6.7-alt1_5.x86_64.rpm | Arbitrary precision arithmetic system and calculator |
| calc-devel-2.12.6.7-alt1_5.x86_64.rpm | Development files for the calc arithmetic system |
| calc-libs-2.12.6.7-alt1_5.x86_64.rpm | Libraries for the calc arithmetic system |
| calc-stdrc-2.12.6.7-alt1_5.x86_64.rpm | Standard resource files the calc arithmetic system |
| calendar-1.28-alt1_8.20140613cvs.x86_64.rpm | Reminder utility |
| callgit-2.0-alt1_21.x86_64.rpm | A tool for Ham Radio Operators to look up call-signs on the web |
| caml2html-1.4.4-alt3_1.x86_64.rpm | Highlight OCaml code by adding some color |
| camorama-0.20.3-alt1_1.x86_64.rpm | Gnome webcam viewer |
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