fastx_toolkit - Tools to process short-reads FASTA/FASTQ files

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports x86_64
Package filename fastx_toolkit-0.0.14-alt2_23.x86_64.rpm
Package name fastx_toolkit
Package version 0.0.14
Package release alt2_23
Package architecture x86_64
Package type rpm
Category Engineering
Homepage -
License -
Maintainer -
Download size 456.28 KB
Installed size 456.28 KB
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).
The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.
However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.


Package Version Architecture Repository
fastx_toolkit-0.0.14-alt2_23.i586.rpm 0.0.14 i586 Autoimports
fastx_toolkit - - -


Name Value
/lib64/ -
/usr/bin/env -
/usr/bin/gnuplot -
/usr/bin/perl -
bash -
coreutils -
gawk - - - - - - - - - - - - - - - -
perl(Data/ -
perl(GD/Graph/ -
perl(Getopt/ -
perl(IO/ -
perl( -
perl(PerlIO/ -
perl-GD-Graph -
perl-PerlIO-gzip -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -
sed -


Name Value
fastx_toolkit = 0.0.14-alt2_23


Type URL
Binary Package fastx_toolkit-0.0.14-alt2_23.x86_64.rpm
Source Package fastx_toolkit-0.0.14-alt2_23.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    rpm [Sisyphus] x86_64 autoimports
    rpm [Sisyphus] noarch autoimports
  2. Update the package index:
    # sudo apt-get update
  3. Install fastx_toolkit rpm package:
    # sudo apt-get install fastx_toolkit



See Also

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