python3-module-ProDy-1.10.10-alt1_4.x86_64.rpm


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Description

python3-module-ProDy - Application for protein structure, dynamics and sequence analysis

Property Value
Distribution ALT Linux Sisyphus
Repository Autoimports x86_64
Package filename python3-module-ProDy-1.10.10-alt1_4.x86_64.rpm
Package name python3-module-ProDy
Package version 1.10.10
Package release alt1_4
Package architecture x86_64
Package type rpm
Category Other
Homepage -
License -
Maintainer -
Download size 8.03 MB
Installed size 8.03 MB
This is ProDy Python3 package for protein structure, dynamics,
and sequence analysis.  It allows for comparative analysis and modeling of
protein structural dynamics and sequence co-evolution.  Fast and flexible ProDy
API is for interactive usage as well as application development.  ProDy also
comes with several analysis applications and a graphical user interface for
visual analysis.
- Visit http://www.csb.pitt.edu/ProDy/ -

Alternatives

Package Version Architecture Repository
python3-module-ProDy-1.10.10-alt1_4.i586.rpm 1.10.10 i586 Autoimports
python3-module-ProDy - - -

Requires

Name Value
/usr/bin/python3 -
/usr/lib64/python3/site-packages -
ipython -
ipython3 -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libpython3.7m.so.1.0()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
python3(Bio) < 0
python3(Bio.SubsMat) < 0
python3(__future__) < 0
python3(code) < 0
python3(collections) < 0
python3(copy) < 0
python3(datetime) < 0
python3(ftplib) < 0
python3(glob) < 0
python3(gzip) < 0
python3(imp) < 0
python3(inspect) < 0
python3(io) < 0
python3(logging) < 0
python3(logging.handlers) < 0
python3(math) < 0
python3(matplotlib.patches) < 0
python3(mpl_toolkits.mplot3d) < 0
python3(numbers) < 0
python3(numpy) < 0
python3(numpy.linalg) < 0
python3(numpy.random) < 0
python3(numpy.testing) < 0
python3(numpy.testing.decorators) < 0
python3(os) < 0
python3(os.path) < 0
python3(pickle) < 0
python3(platform) < 0
python3(re) < 0
python3(requests) < 0
python3(scipy) < 0
python3(scipy.sparse) < 0
python3(scipy.stats) < 0
python3(shlex) < 0
python3(shutil) < 0
python3(struct) < 0
python3(subprocess) < 0
python3(tempfile) < 0
python3(textwrap) < 0
python3(types) < 0
python3(urllib) < 0
python3(warnings) < 0
python3(xml.etree.ElementTree) < 0
python3(xml.etree.cElementTree) < 0
python3(zipfile) < 0
python3(zlib) < 0
python3-module-biopython -
python3-module-matplotlib -
python3-module-matplotlib-cairo -
python3-module-matplotlib-nbagg -
python3-module-matplotlib-qt4 -
python3-module-matplotlib-qt5 -
python3-module-matplotlib-sphinxext -
python3-module-mpl_toolkits -
python3-module-numpy -
python3-module-numpy-testing -
python3-module-pyparsing -
python3-module-scipy -
python3.7-ABI(64bit) -
rpmlib(PayloadIsLzma) -
rpmlib(SetVersions) -
rtld(GNU_HASH) -

Provides

Name Value
ProDy = 0:1.10.10-alt1_4
python3(prody) -
python3(prody.apps) -
python3(prody.apps.apptools) -
python3(prody.apps.evol_apps) -
python3(prody.apps.evol_apps.evol_coevol) -
python3(prody.apps.evol_apps.evol_conserv) -
python3(prody.apps.evol_apps.evol_fetch) -
python3(prody.apps.evol_apps.evol_filter) -
python3(prody.apps.evol_apps.evol_merge) -
python3(prody.apps.evol_apps.evol_occupancy) -
python3(prody.apps.evol_apps.evol_rankorder) -
python3(prody.apps.evol_apps.evol_refine) -
python3(prody.apps.evol_apps.evol_search) -
python3(prody.apps.prody_apps) -
python3(prody.apps.prody_apps.nmaoptions) -
python3(prody.apps.prody_apps.prody_align) -
python3(prody.apps.prody_apps.prody_anm) -
python3(prody.apps.prody_apps.prody_biomol) -
python3(prody.apps.prody_apps.prody_blast) -
python3(prody.apps.prody_apps.prody_catdcd) -
python3(prody.apps.prody_apps.prody_contacts) -
python3(prody.apps.prody_apps.prody_eda) -
python3(prody.apps.prody_apps.prody_fetch) -
python3(prody.apps.prody_apps.prody_gnm) -
python3(prody.apps.prody_apps.prody_pca) -
python3(prody.apps.prody_apps.prody_select) -
python3(prody.atomic) -
python3(prody.atomic.atom) -
python3(prody.atomic.atomgroup) -
python3(prody.atomic.atomic) -
python3(prody.atomic.atommap) -
python3(prody.atomic.bond) -
python3(prody.atomic.chain) -
python3(prody.atomic.fields) -
python3(prody.atomic.flags) -
python3(prody.atomic.functions) -
python3(prody.atomic.hierview) -
python3(prody.atomic.pointer) -
python3(prody.atomic.residue) -
python3(prody.atomic.segment) -
python3(prody.atomic.select) -
python3(prody.atomic.selection) -
python3(prody.atomic.subset) -
python3(prody.chromatin) -
python3(prody.chromatin.cluster) -
python3(prody.chromatin.functions) -
python3(prody.chromatin.hic) -
python3(prody.chromatin.norm) -
python3(prody.chromatin.straw) -
python3(prody.database) -
python3(prody.database.cath) -
python3(prody.database.dali) -
python3(prody.database.goa) -
python3(prody.database.pfam) -
python3(prody.database.uniprot) -
python3(prody.domain_decomposition) -
python3(prody.domain_decomposition.spectrus) -
python3(prody.dynamics) -
python3(prody.dynamics.analysis) -
python3(prody.dynamics.anm) -
python3(prody.dynamics.bbenm) -
python3(prody.dynamics.compare) -
python3(prody.dynamics.editing) -
python3(prody.dynamics.entropy) -
python3(prody.dynamics.exanm) -
python3(prody.dynamics.functions) -
python3(prody.dynamics.gamma) -
python3(prody.dynamics.gnm) -
python3(prody.dynamics.heatmapper) -
python3(prody.dynamics.mechstiff) -
python3(prody.dynamics.mode) -
python3(prody.dynamics.modeset) -
python3(prody.dynamics.nma) -
python3(prody.dynamics.nmdfile) -
python3(prody.dynamics.pca) -
python3(prody.dynamics.perturb) -
python3(prody.dynamics.plotting) -
python3(prody.dynamics.rtb) -
python3(prody.dynamics.rtbtools) -
python3(prody.dynamics.sampling) -
python3(prody.dynamics.signature) -
python3(prody.dynamics.smtools) -
python3(prody.dynamics.vmdfile) -
python3(prody.ensemble) -
python3(prody.ensemble.conformation) -
python3(prody.ensemble.ensemble) -
python3(prody.ensemble.functions) -
python3(prody.ensemble.pdbensemble) -
python3(prody.kdtree) -
python3(prody.kdtree._CKDTree) -
python3(prody.kdtree.kdtree) -
python3(prody.measure) -
python3(prody.measure.contacts) -
python3(prody.measure.measure) -
python3(prody.measure.transform) -
python3(prody.proteins) -
python3(prody.proteins.blastpdb) -
python3(prody.proteins.blastpdbUniProtKB) -
python3(prody.proteins.ccealign) -
python3(prody.proteins.ciffile) -
python3(prody.proteins.compare) -
python3(prody.proteins.dssp) -
python3(prody.proteins.emdfile) -
python3(prody.proteins.functions) -
python3(prody.proteins.header) -
python3(prody.proteins.localpdb) -
python3(prody.proteins.pdbclusters) -
python3(prody.proteins.pdbfile) -
python3(prody.proteins.pdbligands) -
python3(prody.proteins.psiblast) -
python3(prody.proteins.starfile) -
python3(prody.proteins.stride) -
python3(prody.proteins.wwpdb) -
python3(prody.sequence) -
python3(prody.sequence.analysis) -
python3(prody.sequence.msa) -
python3(prody.sequence.msafile) -
python3(prody.sequence.msaio) -
python3(prody.sequence.msatools) -
python3(prody.sequence.plotting) -
python3(prody.sequence.seqtools) -
python3(prody.sequence.sequence) -
python3(prody.tests) -
python3(prody.tests.apps) -
python3(prody.tests.apps.test_prody_anm) -
python3(prody.tests.apps.test_prody_catdcd) -
python3(prody.tests.apps.test_prody_examples) -
python3(prody.tests.apps.test_prody_gnm) -
python3(prody.tests.apps.test_prody_pca) -
python3(prody.tests.atomic) -
python3(prody.tests.atomic.test_atomic) -
python3(prody.tests.atomic.test_atommap) -
python3(prody.tests.atomic.test_fragment) -
python3(prody.tests.atomic.test_hierview) -
python3(prody.tests.atomic.test_select) -
python3(prody.tests.atomic.test_subset) -
python3(prody.tests.datafiles) -
python3(prody.tests.dynamics) -
python3(prody.tests.dynamics.test_editing) -
python3(prody.tests.dynamics.test_enms) -
python3(prody.tests.dynamics.test_signature) -
python3(prody.tests.ensemble) -
python3(prody.tests.ensemble.test_conformation) -
python3(prody.tests.ensemble.test_ensemble) -
python3(prody.tests.ensemble.test_functions) -
python3(prody.tests.ensemble.test_pdbensemble) -
python3(prody.tests.kdtree) -
python3(prody.tests.kdtree.test_kdtree) -
python3(prody.tests.measure) -
python3(prody.tests.measure.test_contacts) -
python3(prody.tests.measure.test_measure) -
python3(prody.tests.measure.test_transform) -
python3(prody.tests.proteins) -
python3(prody.tests.proteins.test_dssp) -
python3(prody.tests.proteins.test_header) -
python3(prody.tests.proteins.test_localpdb) -
python3(prody.tests.proteins.test_pdbfile) -
python3(prody.tests.proteins.test_wwpdb) -
python3(prody.tests.sequence) -
python3(prody.tests.sequence.test_analysis) -
python3(prody.tests.sequence.test_msa) -
python3(prody.tests.sequence.test_msafile) -
python3(prody.tests.sequence.test_sequence) -
python3(prody.tests.trajectory) -
python3(prody.tests.trajectory.test_dcdfile) -
python3(prody.tests.trajectory.test_frame) -
python3(prody.tests.utilities) -
python3(prody.tests.utilities.test_checkers) -
python3(prody.tests.utilities.test_misctools) -
python3(prody.tests.utilities.test_pathtools) -
python3(prody.trajectory) -
python3(prody.trajectory.dcdfile) -
python3(prody.trajectory.frame) -
python3(prody.trajectory.psffile) -
python3(prody.trajectory.trajbase) -
python3(prody.trajectory.trajectory) -
python3(prody.trajectory.trajfile) -
python3(prody.utilities) -
python3(prody.utilities.catchall) -
python3(prody.utilities.checkers) -
python3(prody.utilities.doctools) -
python3(prody.utilities.drawtools) -
python3(prody.utilities.legacy) -
python3(prody.utilities.logger) -
python3(prody.utilities.misctools) -
python3(prody.utilities.pathtools) -
python3(prody.utilities.settings) -
python3-module-ProDy = 1.10.10-alt1_4

Download

Type URL
Mirror ftp.altlinux.org
Binary Package python3-module-ProDy-1.10.10-alt1_4.x86_64.rpm
Source Package ProDy-1.10.10-alt1_4.src.rpm

Install Howto

  1. Add the following line to /etc/apt/sources.list:
    
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus x86_64 autoimports
    rpm [Sisyphus] http://ftp.altlinux.org/pub/distributions/ALTLinux/autoimports/Sisyphus noarch autoimports
    
  2. Update the package index:
    # sudo apt-get update
  3. Install python3-module-ProDy rpm package:
    # sudo apt-get install python3-module-ProDy

Files

Path
/usr/bin/evol
/usr/bin/evol-3.7
/usr/bin/prody
/usr/bin/prody-3.7
/usr/bin/python3.7-evol
/usr/bin/python3.7-prody
/usr/lib64/python3/site-packages/ProDy-1.10.10-py3.7.egg-info/PKG-INFO
/usr/lib64/python3/site-packages/ProDy-1.10.10-py3.7.egg-info/SOURCES.txt
/usr/lib64/python3/site-packages/ProDy-1.10.10-py3.7.egg-info/dependency_links.txt
/usr/lib64/python3/site-packages/ProDy-1.10.10-py3.7.egg-info/entry_points.txt
/usr/lib64/python3/site-packages/ProDy-1.10.10-py3.7.egg-info/top_level.txt
/usr/lib64/python3/site-packages/prody/__init__.py
/usr/lib64/python3/site-packages/prody/__pycache__/__init__.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/__pycache__/__init__.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/__pycache__/__init__.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/__init__.py
/usr/lib64/python3/site-packages/prody/apps/apptools.py
/usr/lib64/python3/site-packages/prody/apps/__pycache__/__init__.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/__pycache__/__init__.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/__pycache__/__init__.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/__pycache__/apptools.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/__pycache__/apptools.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/__pycache__/apptools.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__init__.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_coevol.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_conserv.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_fetch.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_filter.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_merge.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_occupancy.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_rankorder.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_refine.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/evol_search.py
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/__init__.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/__init__.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/__init__.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_filter.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_filter.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_filter.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_merge.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_merge.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_merge.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_refine.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_refine.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_refine.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_search.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_search.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/evol_apps/__pycache__/evol_search.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__init__.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/nmaoptions.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_align.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_anm.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_biomol.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_blast.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_catdcd.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_contacts.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_eda.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_fetch.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_gnm.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_pca.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/prody_select.py
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/__init__.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/__init__.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/__init__.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_align.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_align.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_align.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_anm.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_anm.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_anm.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-37.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_blast.cpython-37.opt-1.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_blast.cpython-37.opt-2.pyc
/usr/lib64/python3/site-packages/prody/apps/prody_apps/__pycache__/prody_blast.cpython-37.pyc
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See Also

Package Description
python3-module-PyPAM-0.5.0-alt4_44.x86_64.rpm PAM bindings for Python 3
python3-module-SoapySDR-0.7.1-alt1_4.x86_64.rpm Python3 Bindings for SoapySDR
python3-module-acora-2.2-alt1_4.x86_64.rpm A Python multi-keyword text search engine
python3-module-biopython-1.73-alt2_6.x86_64.rpm Python3 tools for computational molecular biology
python3-module-dmidecode-3.12.2-alt3_18.x86_64.rpm Python 3 module to access DMI data
python3-module-fife-0.4.2-alt2_5.x86_64.rpm python library for fife
python3-module-geis-2.2.17-alt1_7.x86_64.rpm GEIS python 3 bindings
python3-module-hokuyoaist-3.0.2-alt3_25.x86_64.rpm Python bindings for hokuyoaist
python3-module-iptables-0.12.0-alt3_9.x86_64.rpm Python library for manipulating iptables
python3-module-lhapdf-6.2.1-alt2_4.x86_64.rpm Les Houches Accord PDF Interface - Python 3 module
python3-module-lzo-1.09-alt4_16.x86_64.rpm LZO bindings for Python3
python3-module-pcapy-0.11.5-alt1_4.x86_64.rpm A Python interface to libpcap
python3-module-posix_ipc-0.9.8-alt4_17.x86_64.rpm POSIX IPC primitives (semaphores and shared memory) for Python
python3-module-py-radix-0.9.3-alt2_16.x86_64.rpm Radix tree data structure for Python
python3-module-pybloomfiltermmap-0.3.15-alt3_15.x86_64.rpm A Bloom filter (bloomfilter) for Python built on mmap
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